ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BDLF2_EBV (P03225) Protein BDLF2 34 0.15
2DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7) 30 2.9
3Y1792_ARCFU (O28482) Hypothetical protein AF1792 30 3.8
4TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase ... 28 8.4

>BDLF2_EBV (P03225) Protein BDLF2|
          Length = 420

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -3

Query: 192 LEVYYIYLCCNVCDLLLATAGYNPRFVRKFTSISLYDL----NNLFWCLSGTRKHNPFCA 25
           L   +IY CC +  L L   G+NP F+  F  +    L     +    LS     NPFC 
Sbjct: 187 LSFVFIYYCCYLAFLALLAFGFNPLFLPSFMPVGAKVLRGKGRDFGVPLSYGCPTNPFCK 246

Query: 24  IIFLLP 7
           +  L+P
Sbjct: 247 VYTLIP 252



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>DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7)|
          Length = 947

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 186 VYYIYLCCNVCDLLLATAGYNP 121
           +YY+    N CD LL TAGY P
Sbjct: 899 LYYMKSVVNACDQLLVTAGYGP 920



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>Y1792_ARCFU (O28482) Hypothetical protein AF1792|
          Length = 137

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -3

Query: 399 EGFDRRNSNPVTIGALCASALIG*TVYHTENGQCVAAVVEPKCRLVLLVLIYGYYEF 229
           E   RR     +IGA  + A++     HTE    +   V   C LVL ++ YGYY F
Sbjct: 79  ERASRRTVEIFSIGAALSGAVMLALDLHTEAALALEFAV--CCVLVLYLIFYGYYSF 133



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>TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase 5 (EC|
           2.3.2.13) (Transglutaminase-5) (TGase 5)
           (Transglutaminase X) (TGase X) (TGX) (TG(X))
          Length = 719

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 260 NTKRHLGSTTAATHWPFSVW*TVYPMRAEAHSAPIVTGFEFLRSNPSCLSIQAFC 424
           NT R LG+    T W F VW   +  R +    P   G++ L + P  +S   +C
Sbjct: 319 NTGRILGNKKKDTIWNFHVWNECWMARKDL--PPAYGGWQVLDATPQEMSNGVYC 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,511,210
Number of Sequences: 219361
Number of extensions: 1315607
Number of successful extensions: 2934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2934
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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