Clone Name | rbastl21a02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_625100.1| PREDICTED: Apis mellifera similar to GA20775-PA (LOC552725), mRNA Length = 2967 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 aacaaattgttcaaatcatat 88 ||||||||||||||||||||| Sbjct: 2391 aacaaattgttcaaatcatat 2411
>gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete sequence Length = 160827 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 caacagcaaatcgcaaacat 161 |||||||||||||||||||| Sbjct: 72539 caacagcaaatcgcaaacat 72558
>emb|BX088523.6| Human DNA sequence from clone DASS-179P20 on chromosome 6, complete sequence Length = 87597 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 acaaaaagggttatgttttc 47 |||||||||||||||||||| Sbjct: 30543 acaaaaagggttatgttttc 30524
>emb|AL662890.3| Human DNA sequence from clone XXbac-308K3 on chromosome 6 Contains a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) pseudogene, a pseudogene similar to part of nucleolar protein 5A NOL5A, a ribosomal protein L13 (RPL13)(BBC1) pseudogene and two CpG islands, complete sequence Length = 137288 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 acaaaaagggttatgttttc 47 |||||||||||||||||||| Sbjct: 5668 acaaaaagggttatgttttc 5649
>emb|AL671879.2| Human DNA sequence from clone XXbac-254L4 on chromosome 6 contains a novel SCAN domain and Integrase core domain containing protein (FLJ31087, KIAA1925), a putative novel transcript, a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) pseudogene and two CpG islands, complete sequence Length = 176995 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 acaaaaagggttatgttttc 47 |||||||||||||||||||| Sbjct: 161777 acaaaaagggttatgttttc 161758
>emb|AL133258.16| Human DNA sequence from clone RP1-207F6 on chromosome 6 Contains the 3' end of the gene for a novel nucleolar protein NOP56 like protein, ESTs, STSs and GSSs, complete sequence Length = 73666 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 acaaaaagggttatgttttc 47 |||||||||||||||||||| Sbjct: 183 acaaaaagggttatgttttc 164
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 aagaaaattattgcacaaaa 33 |||||||||||||||||||| Sbjct: 819988 aagaaaattattgcacaaaa 819969
>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7 Length = 349823 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 taaacggcatttaggttcca 284 |||||||||||||||||||| Sbjct: 326157 taaacggcatttaggttcca 326176
>emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macrophage colony-stimulating factor and IL3 gene for interleukin-3, BAC bCHORI92M14 clone, contig 1 Length = 54760 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 caccacagcagccacacact 302 |||||||||||||||||||| Sbjct: 21076 caccacagcagccacacact 21095
>emb|CR388089.8| Zebrafish DNA sequence from clone CH211-87C14, complete sequence Length = 165808 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tatggtagacagtttatcca 334 |||||||||||||||||||| Sbjct: 205 tatggtagacagtttatcca 186
>ref|NM_137238.2| Drosophila melanogaster SP2353 CG8403-RA (SP2353), mRNA Length = 5166 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 caacagcaaatcgcaaacat 161 |||||||||||||||||||| Sbjct: 1639 caacagcaaatcgcaaacat 1658
>ref|NM_079010.2| Drosophila melanogaster Argonaute 1 CG6671-RB, transcript variant B (AGO1), mRNA Length = 4576 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ccacagcagccacacactgg 304 |||||||||||||||||||| Sbjct: 27 ccacagcagccacacactgg 8
>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone BACR06M19, complete sequence Length = 183161 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ccacagcagccacacactgg 304 |||||||||||||||||||| Sbjct: 77048 ccacagcagccacacactgg 77029
>ref|XM_228073.3| PREDICTED: Rattus norvegicus protein O-fucosyltransferase 2 (predicted) (Pofut2_predicted), mRNA Length = 2484 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gccacacactggccattctc 312 |||||||||||||||||||| Sbjct: 1894 gccacacactggccattctc 1875
>gb|AF239610.1|AF239610 Drosophila melanogaster SP2353 mRNA, complete cds Length = 5166 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 caacagcaaatcgcaaacat 161 |||||||||||||||||||| Sbjct: 1639 caacagcaaatcgcaaacat 1658
>gb|AC165056.2| Phakopsora pachyrhizi clone JGIAFNA-1553N21, complete sequence Length = 41691 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acaaggtaacaagaaaatta 23 |||||||||||||||||||| Sbjct: 25294 acaaggtaacaagaaaatta 25313
>gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, complete sequence Length = 119381 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ttcatccccatcaaacagtccaaa 454 ||||||||||| |||||||||||| Sbjct: 74777 ttcatccccataaaacagtccaaa 74754
>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete sequence Length = 287287 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ccacagcagccacacactgg 304 |||||||||||||||||||| Sbjct: 95192 ccacagcagccacacactgg 95211
>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete sequence Length = 260367 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 caacagcaaatcgcaaacat 161 |||||||||||||||||||| Sbjct: 98794 caacagcaaatcgcaaacat 98813
>emb|AL953884.15| Zebrafish DNA sequence from clone CH211-207L13 in linkage group 14, complete sequence Length = 201115 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 caaacaccaaaacaaattgt 77 |||||||||||||||||||| Sbjct: 179171 caaacaccaaaacaaattgt 179152
>gb|AC004305.1|AC004305 Drosophila melanogaster DNA sequence (P1 DS04822 (D197)), complete sequence Length = 38205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 caacagcaaatcgcaaacat 161 |||||||||||||||||||| Sbjct: 12959 caacagcaaatcgcaaacat 12940
>dbj|AB035447.1| Drosophila melanogaster dAGO1 mRNA for argonaute protein, complete cds Length = 3586 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ccacagcagccacacactgg 304 |||||||||||||||||||| Sbjct: 27 ccacagcagccacacactgg 8 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,768,513 Number of Sequences: 3902068 Number of extensions: 3768513 Number of successful extensions: 70536 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70492 Number of HSP's gapped (non-prelim): 44 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)