ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_625100.1| PREDICTED: Apis mellifera similar to GA20775-PA... 42 1.6
2gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete... 40 6.1
3emb|BX088523.6| Human DNA sequence from clone DASS-179P20 on chr... 40 6.1
4emb|AL662890.3| Human DNA sequence from clone XXbac-308K3 on chr... 40 6.1
5emb|AL671879.2| Human DNA sequence from clone XXbac-254L4 on chr... 40 6.1
6emb|AL133258.16| Human DNA sequence from clone RP1-207F6 on chro... 40 6.1
7gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 6.1
8emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;... 40 6.1
9emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macroph... 40 6.1
10emb|CR388089.8| Zebrafish DNA sequence from clone CH211-87C14, c... 40 6.1
11ref|NM_137238.2| Drosophila melanogaster SP2353 CG8403-RA (SP235... 40 6.1
12ref|NM_079010.2| Drosophila melanogaster Argonaute 1 CG6671-RB, ... 40 6.1
13gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, r... 40 6.1
14ref|XM_228073.3| PREDICTED: Rattus norvegicus protein O-fucosylt... 40 6.1
15gb|AF239610.1|AF239610 Drosophila melanogaster SP2353 mRNA, comp... 40 6.1
16gb|AC165056.2| Phakopsora pachyrhizi clone JGIAFNA-1553N21, comp... 40 6.1
17gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, comp... 40 6.1
18gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34... 40 6.1
19gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42... 40 6.1
20emb|AL953884.15| Zebrafish DNA sequence from clone CH211-207L13 ... 40 6.1
21gb|AC004305.1|AC004305 Drosophila melanogaster DNA sequence (P1 ... 40 6.1
22dbj|AB035447.1| Drosophila melanogaster dAGO1 mRNA for argonaute... 40 6.1

>ref|XM_625100.1| PREDICTED: Apis mellifera similar to GA20775-PA (LOC552725), mRNA
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 68   aacaaattgttcaaatcatat 88
            |||||||||||||||||||||
Sbjct: 2391 aacaaattgttcaaatcatat 2411



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>gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete sequence
          Length = 160827

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   caacagcaaatcgcaaacat 161
             ||||||||||||||||||||
Sbjct: 72539 caacagcaaatcgcaaacat 72558



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>emb|BX088523.6| Human DNA sequence from clone DASS-179P20 on chromosome 6, complete
             sequence
          Length = 87597

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    acaaaaagggttatgttttc 47
             ||||||||||||||||||||
Sbjct: 30543 acaaaaagggttatgttttc 30524



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>emb|AL662890.3| Human DNA sequence from clone XXbac-308K3 on chromosome 6 Contains a
            laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1)
            pseudogene, a pseudogene similar to part of nucleolar
            protein 5A NOL5A, a ribosomal protein L13 (RPL13)(BBC1)
            pseudogene and two CpG islands, complete sequence
          Length = 137288

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   acaaaaagggttatgttttc 47
            ||||||||||||||||||||
Sbjct: 5668 acaaaaagggttatgttttc 5649



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>emb|AL671879.2| Human DNA sequence from clone XXbac-254L4 on chromosome 6 contains a
              novel SCAN domain and Integrase core domain containing
              protein (FLJ31087, KIAA1925), a putative novel transcript,
              a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1)
              pseudogene and two CpG islands, complete sequence
          Length = 176995

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     acaaaaagggttatgttttc 47
              ||||||||||||||||||||
Sbjct: 161777 acaaaaagggttatgttttc 161758



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>emb|AL133258.16| Human DNA sequence from clone RP1-207F6 on chromosome 6 Contains
           the 3' end of the gene for a novel nucleolar protein
           NOP56 like protein, ESTs, STSs and GSSs, complete
           sequence
          Length = 73666

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  acaaaaagggttatgttttc 47
           ||||||||||||||||||||
Sbjct: 183 acaaaaagggttatgttttc 164



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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     aagaaaattattgcacaaaa 33
              ||||||||||||||||||||
Sbjct: 819988 aagaaaattattgcacaaaa 819969



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>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7
          Length = 349823

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    taaacggcatttaggttcca 284
              ||||||||||||||||||||
Sbjct: 326157 taaacggcatttaggttcca 326176



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>emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macrophage colony-stimulating
             factor and IL3 gene for interleukin-3, BAC bCHORI92M14
             clone, contig 1
          Length = 54760

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   caccacagcagccacacact 302
             ||||||||||||||||||||
Sbjct: 21076 caccacagcagccacacact 21095



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>emb|CR388089.8| Zebrafish DNA sequence from clone CH211-87C14, complete sequence
          Length = 165808

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 tatggtagacagtttatcca 334
           ||||||||||||||||||||
Sbjct: 205 tatggtagacagtttatcca 186



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>ref|NM_137238.2| Drosophila melanogaster SP2353 CG8403-RA (SP2353), mRNA
          Length = 5166

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  caacagcaaatcgcaaacat 161
            ||||||||||||||||||||
Sbjct: 1639 caacagcaaatcgcaaacat 1658



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>ref|NM_079010.2| Drosophila melanogaster Argonaute 1 CG6671-RB, transcript variant B
           (AGO1), mRNA
          Length = 4576

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 ccacagcagccacacactgg 304
           ||||||||||||||||||||
Sbjct: 27  ccacagcagccacacactgg 8



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>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone
             BACR06M19, complete sequence
          Length = 183161

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ccacagcagccacacactgg 304
             ||||||||||||||||||||
Sbjct: 77048 ccacagcagccacacactgg 77029



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>ref|XM_228073.3| PREDICTED: Rattus norvegicus protein O-fucosyltransferase 2
            (predicted) (Pofut2_predicted), mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  gccacacactggccattctc 312
            ||||||||||||||||||||
Sbjct: 1894 gccacacactggccattctc 1875



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>gb|AF239610.1|AF239610 Drosophila melanogaster SP2353 mRNA, complete cds
          Length = 5166

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  caacagcaaatcgcaaacat 161
            ||||||||||||||||||||
Sbjct: 1639 caacagcaaatcgcaaacat 1658



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>gb|AC165056.2| Phakopsora pachyrhizi clone JGIAFNA-1553N21, complete sequence
          Length = 41691

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     acaaggtaacaagaaaatta 23
             ||||||||||||||||||||
Sbjct: 25294 acaaggtaacaagaaaatta 25313



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>gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, complete sequence
          Length = 119381

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 431   ttcatccccatcaaacagtccaaa 454
             ||||||||||| ||||||||||||
Sbjct: 74777 ttcatccccataaaacagtccaaa 74754



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>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete
             sequence
          Length = 287287

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   ccacagcagccacacactgg 304
             ||||||||||||||||||||
Sbjct: 95192 ccacagcagccacacactgg 95211



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>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete
             sequence
          Length = 260367

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   caacagcaaatcgcaaacat 161
             ||||||||||||||||||||
Sbjct: 98794 caacagcaaatcgcaaacat 98813



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>emb|AL953884.15| Zebrafish DNA sequence from clone CH211-207L13 in linkage group 14,
              complete sequence
          Length = 201115

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     caaacaccaaaacaaattgt 77
              ||||||||||||||||||||
Sbjct: 179171 caaacaccaaaacaaattgt 179152



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>gb|AC004305.1|AC004305 Drosophila melanogaster DNA sequence (P1 DS04822 (D197)), complete
             sequence
          Length = 38205

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   caacagcaaatcgcaaacat 161
             ||||||||||||||||||||
Sbjct: 12959 caacagcaaatcgcaaacat 12940



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>dbj|AB035447.1| Drosophila melanogaster dAGO1 mRNA for argonaute protein, complete
           cds
          Length = 3586

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 ccacagcagccacacactgg 304
           ||||||||||||||||||||
Sbjct: 27  ccacagcagccacacactgg 8


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,768,513
Number of Sequences: 3902068
Number of extensions: 3768513
Number of successful extensions: 70536
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70492
Number of HSP's gapped (non-prelim): 44
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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