ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LYS1_ASHGO (Q75BV4) Saccharopine dehydrogenase [NAD+, L-lysine-f... 30 1.9
2CP52J_CANMA (Q12588) Cytochrome P450 52A10 (EC 1.14.14.-) (CYPLI... 28 4.3
3DOME_DROME (Q9VWE0) Cytokine receptor precursor (Protein domeless) 28 5.6
4Y1569_ARCFU (O28703) Hypothetical protein AF1569 28 7.3
5TALA_POVJC (P03072) Large T antigen 27 9.6
6LYS1_YEAST (P38998) Saccharopine dehydrogenase [NAD+, L-lysine-f... 27 9.6
7BTD_MOUSE (Q8CIF4) Biotinidase precursor (EC 3.5.1.12) 27 9.6

>LYS1_ASHGO (Q75BV4) Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC|
           1.5.1.7) (Lysine--2-oxoglutarate reductase) (SDH)
          Length = 372

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 308 PWVLSQSTRTTAPIWSRTRRLMKCSCGRASGRTRI 204
           P +L    R TAP+W R + L +  C R S   R+
Sbjct: 338 PSLLQLPERDTAPVWLRAKELFQQHCERLSKEARL 372



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>CP52J_CANMA (Q12588) Cytochrome P450 52A10 (EC 1.14.14.-) (CYPLIIA10)|
           (Alkane-inducible P450-ALK7)
          Length = 519

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 83  IWT*ARASVIHSFQIITRKQKD*LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFC 262
           +W+  R  + H F + +  + + ++ E L L  Y+K+V NE+   L P   S+  N  F 
Sbjct: 337 VWSKLRQEIGHKFGLDSYSRVEDISFELLKLCEYLKAVLNET-LRLYP---SVPRNARFA 392

Query: 263 SKSALL 280
           +K+  L
Sbjct: 393 AKNTTL 398



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>DOME_DROME (Q9VWE0) Cytokine receptor precursor (Protein domeless)|
          Length = 1282

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -3

Query: 136 PGDDLKAVNYTSSSLCPNWGF----DGERMVIWNCCFLLQNGFKPLRGP 2
           PG +L  +N T SS+C +W      +  R ++W      QN F+P+  P
Sbjct: 227 PGQNLTLLNRTESSVCLSWEMPRRSNYNRGLVWQVRVTPQN-FEPITRP 274



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>Y1569_ARCFU (O28703) Hypothetical protein AF1569|
          Length = 259

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 152 LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFCSKSALLSVLIETEPMDLLDMSCW 331
           L  E++    +++SVSN  W++ R     +S+       +A        E   +++  CW
Sbjct: 170 LNLEYVTSGKFVRSVSNPQWYFRRVKHFILSAPAMGVGATAGYIAARSAEIESIIETVCW 229

Query: 332 TWGA 343
           T+ A
Sbjct: 230 TFRA 233



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>TALA_POVJC (P03072) Large T antigen|
          Length = 688

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 110 IHSFQIITRKQKD*LTHEHLLLLAYMKSVSNESW------FYLRPGRMSISSNDAFCSKS 271
           + SF + T K+K  + ++ L+    +  +S   +      F+L P R  +S+ + +C K 
Sbjct: 157 VASFAVYTTKEKAQILYKKLMEKYSVTFISRHGFGGHNILFFLTPHRHRVSAINNYCQKL 216

Query: 272 ALLSVLI 292
              S LI
Sbjct: 217 CTFSFLI 223



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>LYS1_YEAST (P38998) Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC|
           1.5.1.7) (Lysine--2-oxoglutarate reductase) (SDH)
          Length = 372

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 284 RTTAPIWSRTRRLMKCSCGRASGRTRI 204
           R TAP+W R ++L    C R    +R+
Sbjct: 346 RKTAPVWVRAKKLFDRHCARVKRSSRL 372



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>BTD_MOUSE (Q8CIF4) Biotinidase precursor (EC 3.5.1.12)|
          Length = 524

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 148 VFLFPGDDLKAVNYTSSSLCPNWGF-DGERMVIWNCC 41
           + +FP D +   N+T +S+ P   F    ++V WN C
Sbjct: 88  IIVFPEDGIHGFNFTRTSIYPFLDFMPSPKLVRWNPC 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,709,411
Number of Sequences: 219361
Number of extensions: 864878
Number of successful extensions: 1990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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