ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20h11 |
|---|---|
| Clone Library Name | barley_pub |
>DHSB_UROFA (Q70KF8) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 283 Score = 30.8 bits (68), Expect = 0.89 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3 Query: 54 DTTFFFPKYNNF--LLQHDNMSA*NRFARGNPR*RERISF*LCTLPECLLHKIASLVDPN 227 D T F+ +Y + L++DN A F + +P R+++ + EC+L S P+ Sbjct: 154 DMTHFYKQYKSIEPFLKNDNPPAQGEFLQ-SPEDRKKLD----GMYECILCACCSTSCPS 208 Query: 228 LWWNE 242 WWN+ Sbjct: 209 YWWNQ 213
>TRUB_TREPA (O83859) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 366 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 202 RLQASWIQTFGGMNPVLVILGRPRSRSFVVSDGRC 306 R++A W Q+FG RP R+ V S+GRC Sbjct: 320 RIRACWFQSFGTR--------RPGERALVFSEGRC 346
>DHSB_SCHPO (P21911) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 252 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +3 Query: 54 DTTFFFPKYNNF--LLQHDNMSA*NRFARGNPR*RERISF*LCTLPECLLHKIASLVDPN 227 D T+F+ +Y + LQ+DN+ F + +R L L EC+L S P+ Sbjct: 123 DLTYFYKQYKSIEPWLQNDNIPKDKEFYQSRA---DRAK--LDGLYECILCACCSTSCPS 177 Query: 228 LWWN 239 WWN Sbjct: 178 YWWN 181
>AROF_ARATH (P29976) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) Length = 525 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +1 Query: 151 ESELAFDYAHCPNVYCTRLQASWIQTFGGMNPVLVI------LGRPRSRSFVVSDG 300 ES F+ + + + LQ S + TFGG PV+ + +PRS +F DG Sbjct: 141 ESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEKDG 196
>PDR15_ARATH (Q7PC81) Putative pleiotropic drug resistance protein 15| Length = 1390 Score = 27.7 bits (60), Expect = 7.6 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = -2 Query: 229 RFGSTRLAILCNKHSGNVHSQKLIRSL*RGLPRANRFQALILSCCKRKLLYF 74 R GSTR ++ N G++ LI+ L GLP + I CK+K LYF Sbjct: 529 RTGSTRDSLHANYLMGSLFFS-LIKLLADGLPELTLTVSRIAVFCKQKELYF 579
>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| (Flamingo homolog 2) (hFmi2) Length = 3014 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 97 CKRKLLYFGKKNVVSVSLDVFALALPI 17 C+RK Y+GKK +VS+ F L L I Sbjct: 2638 CQRKHHYYGKKGIVSLLRTAFLLLLLI 2664
>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)| (Myeloproliferative leukemia protein) (C-mpl) (CD110 antigen) Length = 635 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 195 LHKIASLVDPNLWWNEPSSGH 257 +H+ L PNL W E SSGH Sbjct: 385 IHQAVRLPTPNLHWREISSGH 405
>ANM7_HUMAN (Q9NVM4) Protein arginine N-methyltransferase 7 (EC 2.1.1.-)| Length = 692 Score = 27.3 bits (59), Expect = 9.9 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -3 Query: 240 HSTK-GLDPRGLQSCAINIRAMCIVKS*FALSSEGCLAQIGFKHSYYHAVKENC-CILER 67 HST+ + P G C NI + + L EG L ++H++ H V+ENC + R Sbjct: 122 HSTEVTVGPEGDMPCRANILVTELFDT--ELIGEGALPS--YEHAHRHLVEENCEAVPHR 177 Query: 66 KMLYQSL 46 +Y L Sbjct: 178 ATVYAQL 184
>NU2C_YUCGL (Q67IA3) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_SISMO (Q67ID9) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_PHOTN (Q67IE2) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_NAREL (Q67IA6) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_MUSCM (Q67IA9) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_MUIMA (Q67IB2) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_MAIRA (Q67IB5) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_ASPOF (Q67IC4) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>NU2C_ALLTE (Q67ID0) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2) Length = 510 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 122 VSSTHIIML*KKIVVFWKEKCCISLSGCFRPGTSN 18 +SST ++M ++ WKE+ IS SG F+ N Sbjct: 63 ISSTSLVMSITALLFRWKEEPIISFSGNFQTNNFN 97
>KCD14_HUMAN (Q9BQ13) Potassium channel tetramerisation domain-containing| protein 14 Length = 225 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -3 Query: 138 CLAQIGFKHSYYHAVKENCCILERKMLYQSLWMFSPW 28 CL + + +YY V C L+ K +++S+ F PW Sbjct: 141 CLVETEEQDAYYSEV---LCFLQDKKMFKSVVKFGPW 174 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,835,743 Number of Sequences: 219361 Number of extensions: 951539 Number of successful extensions: 2297 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2249 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2296 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
