ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p... 30 1.7
2VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI) 30 2.3
3LV6C_HUMAN (P06317) Ig lambda chain V-VI region SUT 30 2.3
4GAS5_YEAST (Q08193) Glycolipid-anchored surface protein 5 precursor 28 8.6
5K0776_CHICK (Q5ZMG1) Protein KIAA0776 homolog 28 8.6
6K0776_MOUSE (Q8CCJ3) Protein KIAA0776 28 8.6

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle|
            attachment abnormal protein 3)
          Length = 3767

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
 Frame = -2

Query: 407  GTLC-LEYCGQGRTC--NSTDESGKRRANTKCYSLGTDMKESDKPSS--LGNK---QNNT 252
            G+LC L+YC     C  N+T ++ +++A  KC +   D+++S+K ++  LG+     +  
Sbjct: 3268 GSLCVLDYCSDVNFCPTNTTCKNMEQQAECKCDAGFMDIRKSEKRTALMLGDDTLCMHVR 3327

Query: 251  DSDDCCCQMDN 219
            D D+C   ++N
Sbjct: 3328 DVDECALGLNN 3338



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>VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI)|
          Length = 623

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 403 LYAWNTAGRDG---HATQLMNQERDEQTRNVT 317
           +Y WN  G DG   +AT L+  + DE+TRN T
Sbjct: 298 VYIWNMRGSDGTSTYATFLVTWKGDEKTRNPT 329



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>LV6C_HUMAN (P06317) Ig lambda chain V-VI region SUT|
          Length = 111

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 161 KYLGSAGKSYNMISLHLSGRCPSDSNSHQNQYCFAYSQENWVY 289
           ++ GS  +S N  SL +SG    D   +   YC +Y +++WV+
Sbjct: 62  RFSGSIDRSSNSASLTISGLQTEDEADY---YCQSYDRDHWVF 101



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>GAS5_YEAST (Q08193) Glycolipid-anchored surface protein 5 precursor|
          Length = 484

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 236 NSHQNQYCFAYSQENWVYLIPSCQCPMSNIS 328
           NS  + +C    QEN +YLI     P S IS
Sbjct: 93  NSQDHSHCMKLLQENGIYLILDVNTPTSAIS 123



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>K0776_CHICK (Q5ZMG1) Protein KIAA0776 homolog|
          Length = 789

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 119 LYMTAKAIFQLLMSKYLGSAGKSYNMISLHLSGRCPSDSNS 241
           L++TA  +FQ      L + G+S   I   LSG+ P D +S
Sbjct: 686 LHLTAVLLFQFSTHCMLHAPGRSVPQIINFLSGKIPEDQHS 726



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>K0776_MOUSE (Q8CCJ3) Protein KIAA0776|
          Length = 793

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 77  ICTEFSFIDAPKHRLYMTAKAIFQLLMSKYLGSAGKSYNMISLHLSGRCPSDSNS 241
           +C +    + P   L++TA  +FQL     L + G+    I   L  + P D ++
Sbjct: 671 LCEQLKVTEDPALILHLTAVLLFQLSTHSMLHAPGRCVPQIIAFLHSKIPEDQHT 725


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,565,022
Number of Sequences: 219361
Number of extensions: 1143169
Number of successful extensions: 3120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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