Clone Name | rbastl20h09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p... | 30 | 1.7 | 2 | VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI) | 30 | 2.3 | 3 | LV6C_HUMAN (P06317) Ig lambda chain V-VI region SUT | 30 | 2.3 | 4 | GAS5_YEAST (Q08193) Glycolipid-anchored surface protein 5 precursor | 28 | 8.6 | 5 | K0776_CHICK (Q5ZMG1) Protein KIAA0776 homolog | 28 | 8.6 | 6 | K0776_MOUSE (Q8CCJ3) Protein KIAA0776 | 28 | 8.6 |
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>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 30.4 bits (67), Expect = 1.7 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Frame = -2 Query: 407 GTLC-LEYCGQGRTC--NSTDESGKRRANTKCYSLGTDMKESDKPSS--LGNK---QNNT 252 G+LC L+YC C N+T ++ +++A KC + D+++S+K ++ LG+ + Sbjct: 3268 GSLCVLDYCSDVNFCPTNTTCKNMEQQAECKCDAGFMDIRKSEKRTALMLGDDTLCMHVR 3327 Query: 251 DSDDCCCQMDN 219 D D+C ++N Sbjct: 3328 DVDECALGLNN 3338
>VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI)| Length = 623 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = -3 Query: 403 LYAWNTAGRDG---HATQLMNQERDEQTRNVT 317 +Y WN G DG +AT L+ + DE+TRN T Sbjct: 298 VYIWNMRGSDGTSTYATFLVTWKGDEKTRNPT 329
>LV6C_HUMAN (P06317) Ig lambda chain V-VI region SUT| Length = 111 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +2 Query: 161 KYLGSAGKSYNMISLHLSGRCPSDSNSHQNQYCFAYSQENWVY 289 ++ GS +S N SL +SG D + YC +Y +++WV+ Sbjct: 62 RFSGSIDRSSNSASLTISGLQTEDEADY---YCQSYDRDHWVF 101
>GAS5_YEAST (Q08193) Glycolipid-anchored surface protein 5 precursor| Length = 484 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 236 NSHQNQYCFAYSQENWVYLIPSCQCPMSNIS 328 NS + +C QEN +YLI P S IS Sbjct: 93 NSQDHSHCMKLLQENGIYLILDVNTPTSAIS 123
>K0776_CHICK (Q5ZMG1) Protein KIAA0776 homolog| Length = 789 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 119 LYMTAKAIFQLLMSKYLGSAGKSYNMISLHLSGRCPSDSNS 241 L++TA +FQ L + G+S I LSG+ P D +S Sbjct: 686 LHLTAVLLFQFSTHCMLHAPGRSVPQIINFLSGKIPEDQHS 726
>K0776_MOUSE (Q8CCJ3) Protein KIAA0776| Length = 793 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +2 Query: 77 ICTEFSFIDAPKHRLYMTAKAIFQLLMSKYLGSAGKSYNMISLHLSGRCPSDSNS 241 +C + + P L++TA +FQL L + G+ I L + P D ++ Sbjct: 671 LCEQLKVTEDPALILHLTAVLLFQLSTHSMLHAPGRCVPQIIAFLHSKIPEDQHT 725 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,565,022 Number of Sequences: 219361 Number of extensions: 1143169 Number of successful extensions: 3120 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3056 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3119 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)