ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome... 80 6e-12
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
3dbj|AK100887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
4dbj|AK062054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
5ref|XM_483534.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
6ref|XM_483533.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
7ref|XM_483532.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
9dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
10dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
11dbj|AK102567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
12dbj|AK099654.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
13dbj|AK067265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
14dbj|AK061684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
15gb|AC149778.2| Bos taurus BAC CH240-9E7 (Children's Hospital Oa... 44 0.36
16gb|BC073069.1| Xenopus laevis MGC82731 protein, mRNA (cDNA clone... 44 0.36
17gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromo... 44 0.36
18emb|CR394546.9| Zebrafish DNA sequence from clone CH211-212I14 i... 44 0.36
19emb|AL512284.20| Human DNA sequence from clone RP11-248M22 on ch... 44 0.36
20gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q... 44 0.36
21emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50 44 0.36
22gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
23gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
25gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
26ref|XM_483446.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
27emb|CR394568.7| Zebrafish DNA sequence from clone CH211-253D5 in... 40 5.6
28emb|AL356098.10| Human DNA sequence from clone RP11-457L23 on ch... 40 5.6
29gb|AC104998.4| Homo sapiens chromosome 8, clone CTC-830C11, comp... 40 5.6
30emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in l... 40 5.6
31emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in... 40 5.6
32gb|U61392.1|PPU61392 Petunia axillaris subsp. parodii F1-ATPase ... 40 5.6
33gb|AC123767.2| Homo sapiens chromosome 8, clone RP11-122L4, comp... 40 5.6
34dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
35dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
36ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) ... 40 5.6
37emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on ch... 40 5.6
38dbj|AB019440.1| Homo sapiens DNA for immunoglobulin heavy-chain ... 40 5.6

>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                         
Query: 145   tcagttgcttatgtcaaagtacttgggatcagcagggaagtcgt 188
             ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 75244 tcagttgcttatgtcgaagtacttgggatcagcagggaagtcgt 75201



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                            
Query: 145      tcagttgcttatgtcaaagtacttgggatcagcagggaagtcgt 188
                ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 19479837 tcagttgcttatgtcgaagtacttgggatcagcagggaagtcgt 19479794



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>dbj|AK100887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128J02, full
            insert sequence
          Length = 2838

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 145  tcagttgcttatgtcaaagtacttgggatcagcagggaagtcgt 188
            ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2703 tcagttgcttatgtcgaagtacttgggatcagcagggaagtcgt 2660



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>dbj|AK062054.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C02, full
            insert sequence
          Length = 1543

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 145  tcagttgcttatgtcaaagtacttgggatcagcagggaagtcgt 188
            ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1408 tcagttgcttatgtcgaagtacttgggatcagcagggaagtcgt 1365



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>ref|XM_483534.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3488

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 3279 ttgcttatgtcgaagtacttgggatcagcagggaagtc 3242



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 2964 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 2905

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 2904 ttatgtttatttgattccatcatgt 2880



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>ref|XM_483533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2860

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 2650 ttgcttatgtcgaagtacttgggatcagcagggaagtc 2613



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 2335 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 2276

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 2275 ttatgtttatttgattccatcatgt 2251



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>ref|XM_483532.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3006

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 2798 ttgcttatgtcgaagtacttgggatcagcagggaagtc 2761



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 2483 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 2424

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 2423 ttatgtttatttgattccatcatgt 2399



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                      
Query: 149      ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
                ||||||||||| ||||||||||||||||||||||||||
Sbjct: 26783609 ttgcttatgtcgaagtacttgggatcagcagggaagtc 26783572



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                            
Query: 220      ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
                |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 26783002 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 26782943

                                         
Query: 280      ctgggtttatctgattccttcatgt 304
                 |  |||||| ||||||| ||||||
Sbjct: 26782942 ttatgtttatttgattccatcatgt 26782918



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 375      tccctgcccgcagtattccaagca 398
                |||||||||||||| |||||||||
Sbjct: 26277741 tccctgcccgcagtcttccaagca 26277764



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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0033D24
          Length = 186132

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 149    ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
              ||||||||||| ||||||||||||||||||||||||||
Sbjct: 126951 ttgcttatgtcgaagtacttgggatcagcagggaagtc 126914



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                          
Query: 220    ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
              |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 126344 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 126285

                                       
Query: 280    ctgggtttatctgattccttcatgt 304
               |  |||||| ||||||| ||||||
Sbjct: 126284 ttatgtttatttgattccatcatgt 126260



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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665C04
          Length = 177054

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                   
Query: 149   ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
             ||||||||||| ||||||||||||||||||||||||||
Sbjct: 46399 ttgcttatgtcgaagtacttgggatcagcagggaagtc 46362



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                         
Query: 220   ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
             |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 45792 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 45733

                                      
Query: 280   ctgggtttatctgattccttcatgt 304
              |  |||||| ||||||| ||||||
Sbjct: 45732 ttatgtttatttgattccatcatgt 45708



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>dbj|AK102567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097K24, full
            insert sequence
          Length = 3006

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 2798 ttgcttatgtcgaagtacttgggatcagcagggaagtc 2761



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 2483 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 2424

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 2423 ttatgtttatttgattccatcatgt 2399



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>dbj|AK099654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066A21, full
            insert sequence
          Length = 3488

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 3279 ttgcttatgtcgaagtacttgggatcagcagggaagtc 3242



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 2964 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 2905

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 2904 ttatgtttatttgattccatcatgt 2880



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>dbj|AK067265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D09, full
            insert sequence
          Length = 2861

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 2651 ttgcttatgtcgaagtacttgggatcagcagggaagtc 2614



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 2336 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 2277

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 2276 ttatgtttatttgattccatcatgt 2252



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>dbj|AK061684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A08, full
            insert sequence
          Length = 1615

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 149  ttgcttatgtcaaagtacttgggatcagcagggaagtc 186
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 1405 ttgcttatgtcgaagtacttgggatcagcagggaagtc 1368



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtccatctgacagcaacagtcatcagaatcagtattgttttgcttattcccaagagaa 279
            |||||||||||||||||||| ||||||||||| || || |||| ||||||| || |||| 
Sbjct: 1090 ttgtccatctgacagcaacaatcatcagaatcggtgttatttttcttattcacaggagag 1031

                                     
Query: 280  ctgggtttatctgattccttcatgt 304
             |  |||||| ||||||| ||||||
Sbjct: 1030 ttatgtttatttgattccatcatgt 1006



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>gb|AC149778.2| Bos taurus  BAC CH240-9E7 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 138869

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 311   ccaatgagtaacatttcgtgtt 332
             ||||||||||||||||||||||
Sbjct: 74632 ccaatgagtaacatttcgtgtt 74611



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>gb|BC073069.1| Xenopus laevis MGC82731 protein, mRNA (cDNA clone MGC:82731
            IMAGE:5155666), complete cds
          Length = 2557

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 29   gataaaagctgtacattttggg 50
            ||||||||||||||||||||||
Sbjct: 1801 gataaaagctgtacattttggg 1780



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>gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromosome unknown, complete
              sequence
          Length = 194692

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 16     cattttattggaagataaaagctgtacatt 45
              ||||||||| ||||||||||||| ||||||
Sbjct: 125072 cattttatttgaagataaaagctttacatt 125043



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>emb|CR394546.9| Zebrafish DNA sequence from clone CH211-212I14 in linkage group 16,
             complete sequence
          Length = 174132

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 131   gcaaaagcaatttttcagttgcttat 156
             |||||||||||||||||||| |||||
Sbjct: 52324 gcaaaagcaatttttcagttccttat 52299



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>emb|AL512284.20| Human DNA sequence from clone RP11-248M22 on chromosome 10 Contains
             part of the gene for CamKI-like protein kinase (CKLiK)
             (LOC221042 LOC283070) and two CpG islands, complete
             sequence
          Length = 113920

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 129   cagcaaaagcaatttttcagtt 150
             ||||||||||||||||||||||
Sbjct: 84954 cagcaaaagcaatttttcagtt 84933



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>gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q21-7q22, complete sequence
          Length = 94960

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 16    cattttattggaagataaaagctgtacatt 45
             ||||||||| ||||||||||||| ||||||
Sbjct: 85492 cattttatttgaagataaaagctttacatt 85463



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>emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50
          Length = 170008

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 16    cattttattggaagataaaagctgtacatt 45
             ||||||||| ||||||||||||| ||||||
Sbjct: 99601 cattttatttgaagataaaagctttacatt 99572



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>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0026G02, complete sequence
          Length = 123472

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   gtacaacatgatttctttgca 207
             |||||||||||||||||||||
Sbjct: 43166 gtacaacatgatttctttgca 43186



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>gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0017D19, complete sequence
          Length = 142015

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    gtacaacatgatttctttgca 207
              |||||||||||||||||||||
Sbjct: 113152 gtacaacatgatttctttgca 113172



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 187      gtacaacatgatttctttgca 207
                |||||||||||||||||||||
Sbjct: 22682366 gtacaacatgatttctttgca 22682386



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 187      gtacaacatgatttctttgca 207
                |||||||||||||||||||||
Sbjct: 22992277 gtacaacatgatttctttgca 22992297



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>ref|XM_483446.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2253

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 375 tccctgcccgcagtattccaagca 398
           |||||||||||||| |||||||||
Sbjct: 814 tccctgcccgcagtcttccaagca 791



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>emb|CR394568.7| Zebrafish DNA sequence from clone CH211-253D5 in linkage group 21,
             complete sequence
          Length = 131341

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aactaaatgatgcattttat 23
             ||||||||||||||||||||
Sbjct: 74371 aactaaatgatgcattttat 74352



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>emb|AL356098.10| Human DNA sequence from clone RP11-457L23 on chromosome 13 Contains an
              Alport syndrome mental retardation midface hypoplasia and
              elliptocytosis chromosomal region gene 1 (AMMECR1)
              pseudogene, complete sequence
          Length = 186305

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    gtcatcagaatcagtattgt 259
              ||||||||||||||||||||
Sbjct: 124613 gtcatcagaatcagtattgt 124632



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>gb|AC104998.4| Homo sapiens chromosome 8, clone CTC-830C11, complete sequence
          Length = 129469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    tgatgcattttattggaagataaa 34
             |||||||||||||||||| |||||
Sbjct: 36901 tgatgcattttattggaacataaa 36924



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>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete
              sequence
          Length = 258091

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      ctaaatgatgcattttattg 25
              ||||||||||||||||||||
Sbjct: 115205 ctaaatgatgcattttattg 115186



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>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11,
              complete sequence
          Length = 197146

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      actaaatgatgcattttatt 24
              ||||||||||||||||||||
Sbjct: 146115 actaaatgatgcattttatt 146134



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>gb|U61392.1|PPU61392 Petunia axillaris subsp. parodii F1-ATPase alpha subunit (atpA-1)
            gene, complete cds; mitochondrial gene for mitochondrial
            product
          Length = 2438

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  agtacttgggatcagcaggg 181
            ||||||||||||||||||||
Sbjct: 2193 agtacttgggatcagcaggg 2212



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>gb|AC123767.2| Homo sapiens chromosome 8, clone RP11-122L4, complete sequence
          Length = 154078

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    tgatgcattttattggaagataaa 34
             |||||||||||||||||| |||||
Sbjct: 39482 tgatgcattttattggaacataaa 39459



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>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1770_H02
          Length = 170648

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 375  tccctgcccgcagtattccaagca 398
            |||||||||||||| |||||||||
Sbjct: 7322 tccctgcccgcagtcttccaagca 7345



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>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1014_E06
          Length = 112241

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 375    tccctgcccgcagtattccaagca 398
              |||||||||||||| |||||||||
Sbjct: 110666 tccctgcccgcagtcttccaagca 110689



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>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    acagcaaaagcaatttttca 147
              ||||||||||||||||||||
Sbjct: 765865 acagcaaaagcaatttttca 765846



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>emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on chromosome 4, complete
              sequence
          Length = 223059

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    agtattgttttgcttattcc 271
              ||||||||||||||||||||
Sbjct: 131295 agtattgttttgcttattcc 131314



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>dbj|AB019440.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete
              sequence, 4 of 5
          Length = 200000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    acagcaaaagcaatttttca 147
              ||||||||||||||||||||
Sbjct: 165865 acagcaaaagcaatttttca 165846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,113,925
Number of Sequences: 3902068
Number of extensions: 4113925
Number of successful extensions: 83949
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83797
Number of HSP's gapped (non-prelim): 152
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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