ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 250 2e-63
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 88 2e-14
3ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
4ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
5gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 52 0.001
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.001
7gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 52 0.001
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
9dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
10dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
11dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
12dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
13emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 48 0.017
14gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 48 0.017
15dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.017
16ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.069
17gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.069
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.069
19gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 46 0.069
20gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 44 0.27
21gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 44 0.27
22gb|AY103567.1| Zea mays PCO116252 mRNA sequence 44 0.27
23emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.1
24emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 42 1.1
25emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.1
26ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.2 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  250 bits (126), Expect = 2e-63
 Identities = 142/147 (96%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 85   agctgagctgagcttccgcatgccgatcagacccgtcgggcacgcaccc----ttattgc 140
            |||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                       
Query: 141  cttaattattcatgcaccggcacaact 167
            |||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaact 2750



 Score =  232 bits (117), Expect = 6e-58
 Identities = 129/133 (96%)
 Strand = Plus / Minus

                                                                        
Query: 190  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 249
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 250  gtgctcaaatcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 309
            ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                         
Query: 310  tcccgtgtggtcg 322
            |||||||||||||
Sbjct: 2607 tcccgtgtggtcg 2595
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                       
Query: 263 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 322
           ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtcg 843



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 18   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 67
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 100  ccgcatgccgatcagacccgtcgggcacgcac-ccttattgcctta 144
            ||||||||||||| ||||||||| |||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
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>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2442 atggagatgctgttggggatgcccatggcggtgagccc 2405
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>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2921 atggagatgctgttggggatgcccatggcggtgagccc 2884
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 263   atggatatgctgttcgggatgcccctggcggtgagccc 300
             ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 65812 atggagatgctgttggggatgcccatggcggtgagccc 65775
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 263      atggatatgctgttcgggatgcccctggcggtgagccc 300
                ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27821682 atggagatgctgttggggatgcccatggcggtgagccc 27821645



 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 258      atcaaatggatatgctgttcgggatgcccctggcgg 293
                |||| ||||| |||||||| ||||||||||||||||
Sbjct: 30026450 atcagatggagatgctgttggggatgcccctggcgg 30026415
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>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2915 atggagatgctgttggggatgcccatggcggtgagccc 2878
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 263      atggatatgctgttcgggatgcccctggcggtgagccc 300
                ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27913006 atggagatgctgttggggatgcccatggcggtgagccc 27912969



 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 258      atcaaatggatatgctgttcgggatgcccctggcgg 293
                |||| ||||| |||||||| ||||||||||||||||
Sbjct: 30117872 atcagatggagatgctgttggggatgcccctggcgg 30117837
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>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1328 atggagatgctgttggggatgcccatggcggtgagccc 1291
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>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2593 atggagatgctgttggggatgcccatggcggtgagccc 2556
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>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2923 atggagatgctgttggggatgcccatggcggtgagccc 2886
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>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 263  atggatatgctgttcgggatgcccctggcggtgagccc 300
            ||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1493 atggagatgctgttggggatgcccatggcggtgagccc 1456
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 258  atcaaatggatatgctgttcgggatgcccctggcgg 293
            |||| ||||| |||||||| ||||||||||||||||
Sbjct: 2696 atcagatggagatgctgttggggatgcccctggcgg 2661
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 258   atcaaatggatatgctgttcgggatgcccctggcgg 293
             |||| ||||| |||||||| ||||||||||||||||
Sbjct: 81301 atcagatggagatgctgttggggatgcccctggcgg 81336
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 258  atcaaatggatatgctgttcgggatgcccctggcgg 293
            |||| ||||| |||||||| ||||||||||||||||
Sbjct: 2729 atcagatggagatgctgttggggatgcccctggcgg 2694
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 263  atggatatgctgttcgggatgcccctggcgg 293
            ||||| |||||||| ||||||||||||||||
Sbjct: 2609 atggagatgctgttggggatgcccctggcgg 2579
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 132    ccttattgccttaattattcatg 154
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 132   ccttattgccttaattattcatg 154
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 132      ccttattgccttaattattcatg 154
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 132      ccttattgccttaattattcatg 154
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
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>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 271  gctgttcgggatgcccctggcggtgagcccc 301
            |||||| ||||||||| ||||||||||||||
Sbjct: 2752 gctgttggggatgcccatggcggtgagcccc 2722
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>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 263 atggatatgctgttcgggatgcccctggcggtgagccc 300
           ||||| |||||||| ||||||||| | |||||||||||
Sbjct: 749 atggagatgctgttggggatgcccttagcggtgagccc 712
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>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 263 atggatatgctgttcgggatgcccctggcggtgagcccctcg 304
           ||||| |||||||| || |||||| |||| ||||||||||||
Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
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>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 263  atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 308
            ||||| |||||||| || |||||| |||| || |||||||||||||
Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    aaacaagggattttttctgca 59
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 257  aatcaaatggatatgctgttcgggatgcc 285
            ||||||||||| |||||||| ||||||||
Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    gcaaaacaagggattttttct 56
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ggagggaacatcacaccatc 21
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,012,622
Number of Sequences: 3902068
Number of extensions: 2012622
Number of successful extensions: 38414
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38312
Number of HSP's gapped (non-prelim): 101
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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