ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, co... 40 0.95
2emb|AJ338005.1|HSA338005 Homo sapiens genomic sequence surroundi... 40 0.95
3gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome... 38 3.7
4emb|AL512443.7| Human DNA sequence from clone RP11-108P2 on chro... 38 3.7
5emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in l... 38 3.7
6dbj|AK149037.1| Mus musculus 2 days neonate sympathetic ganglion... 38 3.7
7gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11,... 38 3.7
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.7
9dbj|AP004855.3| Oryza sativa (japonica cultivar-group) genomic D... 38 3.7
10dbj|AP003174.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 3.7
11emb|AL732491.11| Mouse DNA sequence from clone RP23-28I4 on chro... 38 3.7

>gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, complete sequence
          Length = 215975

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    acatccaagatcacagcaaa 77
             ||||||||||||||||||||
Sbjct: 76599 acatccaagatcacagcaaa 76580



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>emb|AJ338005.1|HSA338005 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-IF13C
          Length = 709

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  caagatcacagcaaaagaac 82
           ||||||||||||||||||||
Sbjct: 494 caagatcacagcaaaagaac 513



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>gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome 18, complete sequence
          Length = 169195

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    agtttaactacatccaaga 67
             |||||||||||||||||||
Sbjct: 96938 agtttaactacatccaaga 96956



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>emb|AL512443.7| Human DNA sequence from clone RP11-108P2 on chromosome 1 Contains part
             of a novel gene and the ZNF265 gene for zinc finger
             protein 265, complete sequence
          Length = 55613

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    agatcacagcaaaagaaca 83
             |||||||||||||||||||
Sbjct: 35233 agatcacagcaaaagaaca 35215



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>emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in linkage group 2, complete
              sequence
          Length = 264534

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     acagcaaaagaacattcat 88
              |||||||||||||||||||
Sbjct: 144017 acagcaaaagaacattcat 144035



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>dbj|AK149037.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120478D08
           product:unclassifiable, full insert sequence
          Length = 1458

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 64  aagatcacagcaaaagaac 82
           |||||||||||||||||||
Sbjct: 610 aagatcacagcaaaagaac 628



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>gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11, complete sequence
          Length = 184824

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ttctacatccaggccaatc 40
             |||||||||||||||||||
Sbjct: 78564 ttctacatccaggccaatc 78582



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 47       atagtttaactacatccaagatc 69
                ||||||||||||| |||||||||
Sbjct: 14667142 atagtttaactacttccaagatc 14667164



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>dbj|AP004855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1538_H05
          Length = 132282

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 47    atagtttaactacatccaagatc 69
             ||||||||||||| |||||||||
Sbjct: 57940 atagtttaactacttccaagatc 57962



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>dbj|AP003174.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-136I14, complete
              sequence
          Length = 170156

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     ttctacatccaggccaatc 40
              |||||||||||||||||||
Sbjct: 133329 ttctacatccaggccaatc 133347



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>emb|AL732491.11| Mouse DNA sequence from clone RP23-28I4 on chromosome 11, complete
            sequence
          Length = 60927

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   aagatcacagcaaaagaac 82
            |||||||||||||||||||
Sbjct: 3036 aagatcacagcaaaagaac 3054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 702,192
Number of Sequences: 3902068
Number of extensions: 702192
Number of successful extensions: 80188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80159
Number of HSP's gapped (non-prelim): 29
length of query: 88
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 67
effective length of database: 17,151,101,840
effective search space: 1149123823280
effective search space used: 1149123823280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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