ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur... 32 0.40
2LUZP1_HUMAN (Q86V48) Leucine zipper protein 1 30 1.2
3COX1_MYTED (P41774) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ... 30 1.2
4CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3 29 2.6
5YJEH_ECOLI (P39277) Inner membrane protein yjeH 29 3.4
6GZF3_YEAST (P42944) Protein GZF3 28 4.5
7TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 28 5.8
8YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III 28 5.8
9DOF1A_ARATH (Q9SEZ3) Dof zinc finger protein DOF1.10 (AtDOF1.10)... 28 7.6
10NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate... 28 7.6
11EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2) 27 9.9
12PHR_BUCAI (P57386) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.... 27 9.9

>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 142 TKTSHLTEEEKKKKPCSFPGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIYSSKL 315
           + TS  T   ++    +  GSS S AA+   PK++A  + P N+  SC  A   SS L
Sbjct: 250 SSTSSSTSSTQETAATTSEGSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAVSSDL 305



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>LUZP1_HUMAN (Q86V48) Leucine zipper protein 1|
          Length = 1076

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +1

Query: 145 KTSHL-------TEEEKKKKPCSFPGSSKS*AAVAERPKSMASSFPPNNNQHS 282
           K SH+       T+E KK +    PGSS+S    +    S+ S +PP   +HS
Sbjct: 433 KASHMGVSTDSGTQETKKTEDRFVPGSSQSEGKKSREQPSVLSRYPPAAQEHS 485



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>COX1_MYTED (P41774) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 551

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 226 RRRPNSYWSLGMNKAFFF-----FLLLSNGMFLCLLQCYYFFSVLTQFVTMYCGFGVFCR 62
           + +P +YWS G    F        LL S  M + L   YY  +     ++M   FGVFC 
Sbjct: 351 KMKPAAYWSTGFLFLFTVGGLTGVLLSSASMDVSLHDTYYVVAHFHYVLSMGAVFGVFCG 410

Query: 61  LQY 53
           L +
Sbjct: 411 LNH 413



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>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 111  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 19
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349



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>YJEH_ECOLI (P39277) Inner membrane protein yjeH|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 203 EPGNEQGFFFFSSSVKWDVFVSPPMLLFLFSSYTICNNVLWFWSILSVTIYRVSIV 36
           E G  QG    S+S+      + P L  L +     NN LW W +L + ++ ++IV
Sbjct: 7   ELGLAQGIGLLSTSLLGTGVFAVPALAALVAG----NNSLWAWPVLIILVFPIAIV 58



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>GZF3_YEAST (P42944) Protein GZF3|
          Length = 551

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 100 IV*ELKRNNNI-GGDTKTSHLTEEEKKKKPCSFPGSSKS*AAVAERPKS 243
           ++ ELK + NI     K + +T E+KKKK       + S A ++++PK+
Sbjct: 198 LIAELKGDCNIESSGRKANRVTSEDKKKKSSQLLMGTSSTAKISKKPKT 246



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>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   QNNLKFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 112
           +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 36  KNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69



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>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III|
          Length = 577

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 200 PGNEQGFFFFSSSVKWDVFVSPPMLLFLFSSYTI 99
           P  + G  + S    W  F  PPM+ ++FSS+ I
Sbjct: 246 PNEDHGISYLS----WMAFAIPPMIFYMFSSWFI 275



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>DOF1A_ARATH (Q9SEZ3) Dof zinc finger protein DOF1.10 (AtDOF1.10) (H-protein|
           promoter-binding factor 2b)
          Length = 399

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 30  DSYNADTIYCNRQNTPKPQYIVTNCVRTEKK**HWR---RHKNIPFDRRRKKKK 182
           +S N    Y N  N  +P+Y   NC R      +W      +N+P    R+K K
Sbjct: 138 ESANTKFCYYNNYNVNQPRYFCRNCQR------YWTAGGSMRNVPVGSGRRKNK 185



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>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2|
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 161 VKWDVFVSPPMLLFLFSSYTI 99
           ++W VF  PPM ++L +SY I
Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261



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>EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2)|
          Length = 475

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 260 GKEEAMDFGLSATAA*LLLEPGNEQGFFFFSSSVKWDVFVSPP 132
           G     DFG SA A      P +E GF  +S++V     VSPP
Sbjct: 429 GTAGGSDFGCSAAA------PRSESGFLPYSAAVLSKTAVSPP 465



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>PHR_BUCAI (P57386) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 483

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 276 LIIVWRKGRSHGFWSLGDGGLTL-TGAWE 193
           L+I WR+G  H   +L DG L L  G W+
Sbjct: 359 LLINWREGEEHFISNLIDGDLALNNGGWQ 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,075,109
Number of Sequences: 219361
Number of extensions: 911442
Number of successful extensions: 2705
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2705
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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