ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 301 7e-79
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 295 4e-77
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 5e-18
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 5e-18
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 5e-18
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 5e-18
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 5e-18
8emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for pu... 64 3e-07
9emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 64 3e-07
10emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 56 7e-05
11gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete se... 46 0.067
12gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete s... 46 0.067
13emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 44 0.27
14gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete seq... 42 1.0
15gb|AC174297.11| Medicago truncatula clone mth2-73p24, complete s... 42 1.0
16gb|AC144540.7| Medicago truncatula clone mth2-19p16, complete se... 42 1.0
17gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete s... 42 1.0
18gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete seq... 42 1.0
19gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete s... 42 1.0
20emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 42 1.0
21emb|CT033770.2| Medicago truncatula chromosome 5 clone mth2-176e... 42 1.0
22gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence 40 4.1
23gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 4.1
24gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 40 4.1
25gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome... 40 4.1
26gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, c... 40 4.1
27gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 4.1
28emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on ch... 40 4.1
29emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chr... 40 4.1
30emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chr... 40 4.1
31gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 40 4.1
32emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 4.1
33emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 4.1
34emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 4.1
35emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 ... 40 4.1
36gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosom... 40 4.1
37gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, comp... 40 4.1
38gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 4.1
39gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, comple... 40 4.1
40gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c... 40 4.1
41dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 4.1
42emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 4.1
43emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 40 4.1
44emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 4.1
45emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in ... 40 4.1
46emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 4.1
47emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in ... 40 4.1
48gb|AY110434.1| Zea mays CL533_2 mRNA sequence 40 4.1
49gb|AY109824.1| Zea mays CL533_1 mRNA sequence 40 4.1
50emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-9... 40 4.1
51emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in... 40 4.1
52gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, compl... 40 4.1 
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  301 bits (152), Expect = 7e-79
 Identities = 158/160 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagccaaaataatcttaaattcagttttcgactcctacaatgctgacacgatatattgta 60
            |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 61   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 121  aataataacattggaggagacacaaaaacatcccatttga 160
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  194 bits (98), Expect = 1e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                        
Query: 183  gccttgttcattcccaggctccagtaagagttaggccgccgtcgcc-gagagaccaaaat 241
            |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagaccaaa-t 2635

                                                                        
Query: 242  ccatggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatat 301
            |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

                          
Query: 302  acagctcaaaactg 315
            ||||||||||||||
Sbjct: 2574 acagctcaaaactg 2561
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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  295 bits (149), Expect = 4e-77
 Identities = 152/153 (99%)
 Strand = Plus / Minus

                                                                        
Query: 6    aaaataatcttaaattcagttttcgactcctacaatgctgacacgatatattgtaaccga 65
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 66   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 126  taacattggaggagacacaaaaacatcccattt 158
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710



 Score =  232 bits (117), Expect = 5e-58
 Identities = 129/133 (96%)
 Strand = Plus / Minus

                                                                        
Query: 183  gccttgttcattcccaggctccagtaagagttaggccgccgtcgccgagagaccaaaatc 242
            ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 243  catggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatata 302
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

                         
Query: 303  cagctcaaaactg 315
            |||||||||||||
Sbjct: 2576 cagctcaaaactg 2564
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 44    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 103   gtgtaagaactgaaaagaaataataa 128
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 73/87 (83%), Gaps = 7/87 (8%)
 Strand = Plus / Plus

                                                                         
Query: 236   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 288
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 42261 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 42320

                                        
Query: 289   ctcgcaaaaatatacagctcaaaactg 315
             || ||||||||||||||| ||||||||
Sbjct: 42321 cttgcaaaaatatacagcacaaaactg 42347
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 44       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 103      gtgtaagaactgaaaagaaataataa 128
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 73/87 (83%), Gaps = 7/87 (8%)
 Strand = Plus / Plus

                                                                            
Query: 236      caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 288
                |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 24921676 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 24921735

                                           
Query: 289      ctcgcaaaaatatacagctcaaaactg 315
                || ||||||||||||||| ||||||||
Sbjct: 24921736 cttgcaaaaatatacagcacaaaactg 24921762
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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 44   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 103  gtgtaagaactgaaaagaaataataa 128
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 73/87 (83%), Gaps = 7/87 (8%)
 Strand = Plus / Minus

                                                                        
Query: 236  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 288
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 2639 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 2580

                                       
Query: 289  ctcgcaaaaatatacagctcaaaactg 315
            || ||||||||||||||| ||||||||
Sbjct: 2579 cttgcaaaaatatacagcacaaaactg 2553
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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 44   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 103  gtgtaagaactgaaaagaaataataa 128
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 73/87 (83%), Gaps = 7/87 (8%)
 Strand = Plus / Minus

                                                                        
Query: 236  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 288
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 1545 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 1486

                                       
Query: 289  ctcgcaaaaatatacagctcaaaactg 315
            || ||||||||||||||| ||||||||
Sbjct: 1485 cttgcaaaaatatacagcacaaaactg 1459
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 44    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 103   gtgtaagaactgaaaagaaataataa 128
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 73/87 (83%), Gaps = 7/87 (8%)
 Strand = Plus / Plus

                                                                         
Query: 236   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 288
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 49790 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 49849

                                        
Query: 289   ctcgcaaaaatatacagctcaaaactg 315
             || ||||||||||||||| ||||||||
Sbjct: 49850 cttgcaaaaatatacagcacaaaactg 49876
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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 264  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactg 315
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||
Sbjct: 2572 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactg 2521
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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 72/86 (83%), Gaps = 7/86 (8%)
 Strand = Plus / Minus

                                                                        
Query: 237  aaaatccatggcttcttcctttcc-------tccaaacaataatcaacactcatgtaacc 289
            ||||||||||||||||| ||||||       || |||||||||| ||||||||| | |||
Sbjct: 2599 aaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgacc 2540

                                      
Query: 290  tcgcaaaaatatacagctcaaaactg 315
            | ||||||||||||||| ||||||||
Sbjct: 2539 ttgcaaaaatatacagcacaaaactg 2514
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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 264  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactg 315
            |||||||||  ||||||||| | |||| ||||||||||||||| ||||||||
Sbjct: 2666 aaacaataacgaacactcatctgaccttgcaaaaatatacagcacaaaactg 2615
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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 143   caaaaacatcccatttgacagaagaag 169
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842
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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 143   caaaaacatcccatttgacagaagaag 169
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337
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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 107  aagaactgaaaagaaataataacatt 132
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204
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>gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete sequence
          Length = 131049

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      aaaataatcttaaattcagtt 26
              |||||||||||||||||||||
Sbjct: 100850 aaaataatcttaaattcagtt 100830
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>gb|AC174297.11| Medicago truncatula clone mth2-73p24, complete sequence
          Length = 115210

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 48268 aaaataatcttaaattcagtt 48248
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>gb|AC144540.7| Medicago truncatula clone mth2-19p16, complete sequence
          Length = 78737

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 25465 aaaataatcttaaattcagtt 25445
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>gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete sequence
          Length = 121952

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 34894 aaaataatcttaaattcagtt 34914
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>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
          Length = 92738

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 85376 aaaataatcttaaattcagtt 85396
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>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence
          Length = 97982

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 42222 aaaataatcttaaattcagtt 42202
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 35     ctacaatgctgacacgatatattgt 59
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707
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>emb|CT033770.2| Medicago truncatula chromosome 5 clone mth2-176e1, COMPLETE SEQUENCE
          Length = 138194

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaataatcttaaattcagtt 26
             |||||||||||||||||||||
Sbjct: 84861 aaaataatcttaaattcagtt 84841
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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 237 aaaatccatggcttcttcctttcc 260
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97
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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gaaaagaaataataacattg 133
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342
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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aaattgtgtaagaactgaaa 117
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504
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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ccatggcttcttcctttcct 261
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503
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>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 94     ttacaaattgtgtaagaactgaaaagaaataa 125
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665
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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tgaaaagaaataataacatt 132
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844
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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 101 ttgtgtaagaactgaaaagaaata 124
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32
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>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   caaaaatatacagctcaaaa 312
             ||||||||||||||||||||
Sbjct: 35208 caaaaatatacagctcaaaa 35189
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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    ttgtgtaagaactgaaaagaaata 124
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398
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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   tgaaaagaaataataacatt 132
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606
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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 taagaactgaaaagaaataa 125
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620
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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgctgacacgatatattgt 59
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439
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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     atgctgacacgatatattgt 59
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776
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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tgaaaagaaataataacatt 132
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763
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>gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosome ul, complete sequence
          Length = 205759

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tcccaggctccagtaagagt 213
              ||||||||||||||||||||
Sbjct: 139341 tcccaggctccagtaagagt 139360
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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    acaaattgtgtaagaactga 115
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382
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>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ttgttcattcccaggctcca 205
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817
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>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aagccaaaataatcttaaat 20
             ||||||||||||||||||||
Sbjct: 28464 aagccaaaataatcttaaat 28483
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>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  gtgtaagaactgaaaagaaa 122
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    taagaactgaaaagaaataataac 129
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724
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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   gaaaagaaataataacattg 133
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810
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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgctgacacgatatattgt 59
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgctgacacgatatattgt 59
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824
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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 tgaaaagaaataataacatt 132
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379
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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgctgacacgatatattgt 59
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875
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>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgctgacacgatatattgt 59
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971
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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 237 aaaatccatggcttcttcctttcc 260
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649
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>gb|AY109824.1| Zea mays CL533_1 mRNA sequence
          Length = 2894

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 289  ctcgcaaaaatatacagctcaaaa 312
            ||||||||| ||||||||||||||
Sbjct: 2656 ctcgcaaaattatacagctcaaaa 2633
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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   taacattggaggagacacaaaaac 149
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116
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>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     atgctgacacgatatattgt 59
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096
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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  gaaaagaaataataacattg 133
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,859,040
Number of Sequences: 3902068
Number of extensions: 3859040
Number of successful extensions: 87335
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87184
Number of HSP's gapped (non-prelim): 145
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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