ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DJLA_MANSM (Q65RA1) DnaJ-like protein djlA 30 2.0
2AT1A2_CHICK (P24797) Sodium/potassium-transporting ATPase alpha-... 29 2.6
3ETF1_YMTV (Q9QB97) Early transcription factor 70 kDa subunit (EC... 28 4.5
4EDEM2_HUMAN (Q9BV94) ER degradation-enhancing alpha-mannosidase-... 28 5.9
5WNK3_HUMAN (Q9BYP7) Serine/threonine-protein kinase WNK3 (EC 2.7... 28 7.7
6TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger pr... 27 10.0

>DJLA_MANSM (Q65RA1) DnaJ-like protein djlA|
          Length = 288

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 158 QTANLQLNTVPRTTIKVEEEEEDLQNNLRSQVWSDGAARHCARLALQGGK 9
           QT    L  + +   +V EE+  L NNL SQ+  D A R  A+ A   GK
Sbjct: 59  QTTFAVLGHLSKAKGRVTEEDIQLANNLMSQMQLDVANRQLAQNAFNRGK 108



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>AT1A2_CHICK (P24797) Sodium/potassium-transporting ATPase alpha-2 chain (EC|
           3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2)
          Length = 1017

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 161 PQTANLQLNTVPRTTIKVEEEEEDLQNNLRSQVWS-DGAARHCARLALQGGKVP 3
           P+   +  N+  +  + + E EED Q ++     + +     C+R+ LQG +VP
Sbjct: 470 PKVTEIPFNSTNKYQLSIHEREEDPQGHILVMKGAPERILERCSRILLQGQEVP 523



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>ETF1_YMTV (Q9QB97) Early transcription factor 70 kDa subunit (EC 3.6.1.-)|
           (ATP-dependent helicase VETFS) (VETF small subunit)
          Length = 635

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 227 GG*IIPFVYTS*CTSQFN--MALEPQTANLQLNTVPRTTIKVEEEEEDLQNNLRSQVWSD 54
           GG II ++  S   S++N      P+  N +  T    T K++   EDL N   SQ+  D
Sbjct: 351 GGLIIKYIMLSNGYSEYNGSQGTNPKLINGKPKTFAIVTSKMKSSLEDLLNVYNSQLNKD 410

Query: 53  GA 48
           G+
Sbjct: 411 GS 412



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>EDEM2_HUMAN (Q9BV94) ER degradation-enhancing alpha-mannosidase-like 2|
           precursor
          Length = 578

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 183 TVQHGAGAPNGKPPTKYRPKNHHQSGRRRRRPTE 82
           TV  G   P  +P T + P+NH Q+  R R+P +
Sbjct: 519 TVSSGPWEPPARPGTLFSPENHDQA--RERKPAK 550



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>WNK3_HUMAN (Q9BYP7) Serine/threonine-protein kinase WNK3 (EC 2.7.11.1)|
           (Protein kinase with no lysine 3) (Protein kinase,
           lysine-deficient 3)
          Length = 1743

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 191 CTSQFNMALEPQTANLQLNTVPRTTIKVEEEEEDLQNNLRSQVWSDGAARHCA 33
           C S  N+  +PQ   L L    +T  + EE E D   ++R Q+      +HC+
Sbjct: 511 CKSMGNVFPQPQNTTLPLAPAQQTGAECEETEVD--QHVRQQLLQRKPQQHCS 561



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>TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger protein 15) (Zinc|
           finger protein RoRet)
          Length = 465

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 301 LITSSYLTRWTSKMHIDIYALAAAVGDESYLLCTLHDAHHSSTWRWSPKRQ 149
           L T+  +T+W  K+ I    + +   D   L C LH+   S  WR   + Q
Sbjct: 159 LSTAMRITKWKEKVQIQRQKIRS---DFKNLQCFLHEEEKSYLWRLEKEEQ 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,394,883
Number of Sequences: 219361
Number of extensions: 930799
Number of successful extensions: 2728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2725
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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