>HPS5_HUMAN (Q9UPZ3) Hermansky-Pudlak syndrome 5 protein (Alpha-integrin-binding|
            protein 63) (Ruby-eye protein 2 homolog) (Ru2)
          Length = 1129

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 288  RFDWLSVPVIL*NPPCSSSLVKG--RRPHSQLRSW 386
            R DWL + V L  PP +S++      RPHS L SW
Sbjct: 920  RLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 954

>RENT1_SCHPO (Q09820) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
           (ATP-dependent helicase SPAC16C9.06c)
          Length = 925

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = -2

Query: 256 CNRSFCALVAKDRTDIHISLLTNDVRLSFPLSRKTFLIFHFHRPLQHSVCIAH*TAGTTG 77
           CN+ FC +  K      IS L          +R   +  H H  L  +V   +   GT  
Sbjct: 61  CNKWFCNVRGKSGASHIISHLVR--------ARHKQVALHSHSSLSDTVLECY-NCGTRN 111

Query: 76  VGMLLFLPAELTFMFQLLC 20
           V +L F+PA+   +  LLC
Sbjct: 112 VFLLGFIPAKAKTVVVLLC 130

>BCAR3_BOVIN (Q58DL5) Breast cancer anti-estrogen resistance protein 3|
          Length = 826

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 335 TWRVLEDDRHTQPVKPPL*CKEGTGDMQQKFLCPCCKGQDRYSYKPS 195
           ++ +L+DD  T+P KPP    +  G+ Q  F+ P    +   S+KP+
Sbjct: 475 SYLILDDDDRTRPWKPPPAPGDTVGEDQDTFVMPLL--ETTSSFKPN 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,308,996
Number of Sequences: 219361
Number of extensions: 1203938
Number of successful extensions: 2809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2808
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)