ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
4dbj|AK068622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
7emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 52 0.001
8emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa... 52 0.001
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
10dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
11gb|BT018734.1| Zea mays clone EL01N0520C05.d mRNA sequence 46 0.092
12gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 42 1.4
13gb|AC102124.16| Mus musculus chromosome 18, clone RP23-188D1, co... 42 1.4
14gb|AC096651.1| Homo sapiens BAC clone RP11-16J15 from 4, complet... 42 1.4
15gb|AY112137.1| Zea mays CL37816_1 mRNA sequence 42 1.4
16gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, co... 40 5.7
17gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, co... 40 5.7
18gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, comp... 40 5.7
19gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complet... 40 5.7
20gb|AC144514.10| Medicago truncatula clone mth2-12j2, complete se... 40 5.7
21gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete s... 40 5.7
22gb|AC164100.2| Mus musculus BAC clone RP23-11E1 from chromosome ... 40 5.7
23emb|AL591431.8| Human DNA sequence from clone RP11-1057F13 on ch... 40 5.7
24gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, c... 40 5.7
25gb|DP000050.1| Felis catus target 126 genomic scaffold 40 5.7
26gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.7
27gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome ... 40 5.7
28gb|AC009558.14|AC009558 Homo sapiens chromosome 15, clone RP11-1... 40 5.7
29gb|AC012050.7|AC012050 Homo sapiens chromosome 15 clone RP11-552... 40 5.7
30dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.7
31emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chro... 40 5.7
32emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1... 40 5.7
33gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, comp... 40 5.7 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 369    tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
              |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 135683 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 135736



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 224    ctttgcaacaagggcacaaaaacttctgttgcatg 258
              |||||||||||||||| ||| | ||||||||||||
Sbjct: 135542 ctttgcaacaagggcaaaaacatttctgttgcatg 135576
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 369    tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
              |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 143632 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 143685



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 224    ctttgcaacaagggcacaaaaacttctgttgcatg 258
              |||||||||||||||| ||| | ||||||||||||
Sbjct: 143491 ctttgcaacaagggcaaaaacatttctgttgcatg 143525
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>dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061A09, full
            insert sequence
          Length = 2576

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 369  tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
            |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 2192 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 2139



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 224  ctttgcaacaagggcacaaaaacttctgttgcatg 258
            |||||||||||||||| ||| | ||||||||||||
Sbjct: 2333 ctttgcaacaagggcaaaaacatttctgttgcatg 2299
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>dbj|AK068622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154A11, full
            insert sequence
          Length = 2188

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 369  tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
            |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 2037 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 1984



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 224  ctttgcaacaagggcacaaaaacttctgttgcatg 258
            |||||||||||||||| ||| | ||||||||||||
Sbjct: 2178 ctttgcaacaagggcaaaaacatttctgttgcatg 2144
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 369    tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
              |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 143632 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 143685



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 224    ctttgcaacaagggcacaaaaacttctgttgcatg 258
              |||||||||||||||| ||| | ||||||||||||
Sbjct: 143491 ctttgcaacaagggcaaaaacatttctgttgcatg 143525
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 369    tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
              |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 135683 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 135736



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 224    ctttgcaacaagggcacaaaaacttctgttgcatg 258
              |||||||||||||||| ||| | ||||||||||||
Sbjct: 135542 ctttgcaacaagggcaaaaacatttctgttgcatg 135576
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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 369    tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
              |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 143632 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 143685



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 224    ctttgcaacaagggcacaaaaacttctgttgcatg 258
              |||||||||||||||| ||| | ||||||||||||
Sbjct: 143491 ctttgcaacaagggcaaaaacatttctgttgcatg 143525
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>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 369   tctcagcttcgatcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
             |||||| || |||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 87292 tctcagtttggatcattgctttcttggcgagctcatagcctgcaaagttcattg 87345



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 224   ctttgcaacaagggcacaaaaacttctgttgcatg 258
             |||||||||||||||| ||| | ||||||||||||
Sbjct: 87151 ctttgcaacaagggcaaaaacatttctgttgcatg 87185
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 120     tgtaaaggcctatggaaatggaaa 143
               ||||||||||||||||||||||||
Sbjct: 1005899 tgtaaaggcctatggaaatggaaa 1005876
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>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1217_F02
          Length = 118822

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 120   tgtaaaggcctatggaaatggaaa 143
             ||||||||||||||||||||||||
Sbjct: 77318 tgtaaaggcctatggaaatggaaa 77295
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>gb|BT018734.1| Zea mays clone EL01N0520C05.d mRNA sequence
          Length = 1625

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 380  atcatggccttcttggcgagctcgtaacctgcaaagtttattg 422
            ||||| ||||||||||| ||||| || ||||||||||| ||||
Sbjct: 1270 atcattgccttcttggcaagctcatagcctgcaaagttcattg 1228
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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 175  ataacctaacatcatttgtaa 195
            |||||||||||||||||||||
Sbjct: 3716 ataacctaacatcatttgtaa 3736
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>gb|AC102124.16| Mus musculus chromosome 18, clone RP23-188D1, complete sequence
          Length = 222450

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    ataacctaacatcatttgtaa 195
              |||||||||||||||||||||
Sbjct: 173720 ataacctaacatcatttgtaa 173740
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>gb|AC096651.1| Homo sapiens BAC clone RP11-16J15 from 4, complete sequence
          Length = 158661

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 135   aaatggaaaatcaaaaaagttttcc 159
             ||||| |||||||||||||||||||
Sbjct: 27890 aaatgaaaaatcaaaaaagttttcc 27914
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>gb|AY112137.1| Zea mays CL37816_1 mRNA sequence
          Length = 635

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 386 gccttcttggcgagctcgtaacctgcaaagtttattg 422
           ||||||||||| ||||| || ||||||||||| ||||
Sbjct: 219 gccttcttggcaagctcatagcctgcaaagttcattg 183
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>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence
          Length = 175843

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    tgagtgtgcctgtcatcctc 320
              ||||||||||||||||||||
Sbjct: 115884 tgagtgtgcctgtcatcctc 115865
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>gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    ggaaatggaaaatcaaaaaa 152
              ||||||||||||||||||||
Sbjct: 122947 ggaaatggaaaatcaaaaaa 122928
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>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence
          Length = 357655

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   cttcgatcatggccttcttggcga 398
             |||||||||||||||||| |||||
Sbjct: 70275 cttcgatcatggccttctcggcga 70252
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>gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complete sequence
          Length = 250884

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   ggaaatggaaaatcaaaaaa 152
             ||||||||||||||||||||
Sbjct: 30071 ggaaatggaaaatcaaaaaa 30090
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>gb|AC144514.10| Medicago truncatula clone mth2-12j2, complete sequence
          Length = 110255

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   atggaaatggaaaatcaaaa 150
             ||||||||||||||||||||
Sbjct: 40200 atggaaatggaaaatcaaaa 40219
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>gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete sequence
          Length = 114945

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   atggaaatggaaaatcaaaa 150
             ||||||||||||||||||||
Sbjct: 38123 atggaaatggaaaatcaaaa 38104
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>gb|AC164100.2| Mus musculus BAC clone RP23-11E1 from chromosome 14, complete sequence
          Length = 214128

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   tccagttccctctttacatc 280
             ||||||||||||||||||||
Sbjct: 22358 tccagttccctctttacatc 22339
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>emb|AL591431.8| Human DNA sequence from clone RP11-1057F13 on chromosome Xq21.1-21.2
            Contains the 5' end of a novel pseudogene, gene MGC26999
            and a CpG island, complete sequence
          Length = 151017

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  agaggaggtttgactggttg 302
            ||||||||||||||||||||
Sbjct: 9960 agaggaggtttgactggttg 9941
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>gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    cctcattctcagcttcgatc 382
              ||||||||||||||||||||
Sbjct: 140333 cctcattctcagcttcgatc 140352
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>gb|DP000050.1| Felis catus target 126 genomic scaffold
          Length = 269350

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tggaaatggaaaatcaaaaa 151
             ||||||||||||||||||||
Sbjct: 62540 tggaaatggaaaatcaaaaa 62559
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     ggcacaaaaacttctgttgc 255
               ||||||||||||||||||||
Sbjct: 3062281 ggcacaaaaacttctgttgc 3062262
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>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence
          Length = 197373

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    acagttgaaacatgaaagta 44
             ||||||||||||||||||||
Sbjct: 57416 acagttgaaacatgaaagta 57435
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>gb|AC009558.14|AC009558 Homo sapiens chromosome 15, clone RP11-142J21, complete sequence
          Length = 184568

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 135    aaatggaaaatcaaaaaagttttc 158
              ||||||||||||| ||||||||||
Sbjct: 133342 aaatggaaaatcagaaaagttttc 133319
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>gb|AC012050.7|AC012050 Homo sapiens chromosome 15 clone RP11-552E10 map 15q21.1, complete
             sequence
          Length = 191286

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   aaatggaaaatcaaaaaagttttc 158
             ||||||||||||| ||||||||||
Sbjct: 19874 aaatggaaaatcagaaaagttttc 19851
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>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14
          Length = 82890

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gttcttcttctcttgtgaag 353
             ||||||||||||||||||||
Sbjct: 15464 gttcttcttctcttgtgaag 15445
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>emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chromosome 14, complete
             sequence
          Length = 200375

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   tccagttccctctttacatc 280
             ||||||||||||||||||||
Sbjct: 21153 tccagttccctctttacatc 21172
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>emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1141N12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158099

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   taagaaggcttatatgaatatctg 216
             |||||||||||| |||||||||||
Sbjct: 63976 taagaaggcttaaatgaatatctg 63953
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>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence
          Length = 260188

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   ggaaatggaaaatcaaaaaa 152
             ||||||||||||||||||||
Sbjct: 59140 ggaaatggaaaatcaaaaaa 59121


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,479,417
Number of Sequences: 3902068
Number of extensions: 4479417
Number of successful extensions: 83577
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83357
Number of HSP's gapped (non-prelim): 220
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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