>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B (EC|
            1.14.11.-) (Jumonji domain-containing protein 1B)
            (Nuclear protein 5qNCA)
          Length = 1761

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C +LTQ+FR L       EDKL+VK +I +AV  AV  
Sbjct: 1691 VHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGT 1750

Query: 222  LKEH 211
            LK H
Sbjct: 1751 LKAH 1754

>JHD2B_MOUSE (Q6ZPY7) JmjC domain-containing histone demethylation protein 2B (EC|
            1.14.11.-) (Jumonji domain-containing protein 1B)
          Length = 1562

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C +LTQ+FR L       EDKL+VK +I +AV  AV  
Sbjct: 1492 VHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGT 1551

Query: 222  LKEH 211
            LK H
Sbjct: 1552 LKAH 1555

>JHD2A_CHICK (Q5ZIX8) JmjC domain-containing histone demethylation protein 2A (EC|
            1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1325

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 35/67 (52%), Positives = 44/67 (65%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C  LTQ+FR L       EDKL+VK +I +AV  AV I
Sbjct: 1255 VHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDAVGI 1314

Query: 222  LKEHYHS 202
            L+ +  S
Sbjct: 1315 LRANESS 1321

>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A (EC|
            1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1323

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 34/62 (54%), Positives = 43/62 (69%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C  LTQ+FR L +     EDKL+VK +I +AV  AV +
Sbjct: 1253 VHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAM 1312

Query: 222  LK 217
            LK
Sbjct: 1313 LK 1314

>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A (EC|
            1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1321

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 34/62 (54%), Positives = 43/62 (69%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C  LTQ+FR L +     EDKL+VK +I +AV  AV +
Sbjct: 1251 VHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAM 1310

Query: 222  LK 217
            LK
Sbjct: 1311 LK 1312

>JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation protein 2A (EC|
            1.14.11.-) (Jumonji domain-containing protein 1A)
            (Testis-specific gene A protein) (Zinc-finger protein
            TSGA)
          Length = 1214

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 34/62 (54%), Positives = 43/62 (69%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C  LTQ+FR L +     EDKL+VK +I +AV  AV +
Sbjct: 1137 VHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNVIYHAVKDAVAM 1196

Query: 222  LK 217
            LK
Sbjct: 1197 LK 1198

>JD2AB_XENLA (Q5HZN1) JmjC domain-containing histone demethylation protein 2A-B|
            (EC 1.14.11.-) (Jumonji domain-containing protein 1A-B)
          Length = 1334

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 34/67 (50%), Positives = 44/67 (65%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C  LTQ+FR L       EDKL+VK +I +AV  ++ I
Sbjct: 1264 VHNLYSCIKVAEDFVSPEHVKHCFCLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSIAI 1323

Query: 222  LKEHYHS 202
            LK +  S
Sbjct: 1324 LKANESS 1330

>JD2AA_XENLA (Q6IRB8) JmjC domain-containing histone demethylation protein 2A-A|
            (EC 1.14.11.-) (Jumonji domain-containing protein 1A-A)
          Length = 1331

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 33/62 (53%), Positives = 42/62 (67%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V NL SC K+A DFVSPE+V+ C  LTQ+FR L       EDKL+VK +I +AV  ++ I
Sbjct: 1261 VHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSIAI 1320

Query: 222  LK 217
            LK
Sbjct: 1321 LK 1322

>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C) (Thyroid receptor-interacting protein 8)
            (TRIP-8)
          Length = 2540

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 28/64 (43%), Positives = 40/64 (62%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V+N  SC ++  DFVSPE++ E   LTQ+ R+L K     +DKL+VK ++ +AV   V  
Sbjct: 2468 VQNFHSCIQVTEDFVSPEHLVESFHLTQELRLL-KEEINYDDKLQVKNILYHAVKEMVRA 2526

Query: 222  LKEH 211
            LK H
Sbjct: 2527 LKIH 2530

>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C)
          Length = 2350

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 27/64 (42%), Positives = 40/64 (62%)
 Frame = -1

Query: 402  VRNLKSCTKIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMIIYAVDHAVNI 223
            V+N  SC ++  DFVSPE++ +   LTQ+ R+L K     +DKL+VK ++ +AV   V  
Sbjct: 2278 VQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLL-KEEINYDDKLQVKNILYHAVKEMVRA 2336

Query: 222  LKEH 211
            LK H
Sbjct: 2337 LKMH 2340

>PRIA_HELPY (O25149) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 619

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 64  FCIVHLSSVIVPERFWQHYTFYSTPLSSICPITQIPQETMSASKRGRVVMLLQNVHGMIN 243
           FC V++S  +   +   HY  +S+P+  IC      Q  +   KR   + +L+ +  ++ 
Sbjct: 347 FCSVNMSLHLKTNKLMCHYCHFSSPIPKICSAC---QSEVLVGKRIGTMQVLKELESLLE 403

Query: 244 G 246
           G
Sbjct: 404 G 404

>PRIA_HELPJ (Q9ZKE4) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 619

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 64  FCIVHLSSVIVPERFWQHYTFYSTPLSSICPITQIPQETMSASKRGRVVMLLQNVHGMIN 243
           FC V++S  +   +   HY  +S+P+  IC      Q  +   KR   + +L+ +  ++ 
Sbjct: 347 FCSVNMSLHLKTNKLMCHYCHFSSPIPKIC---NACQSEVLVGKRIGTMQVLKELESLLE 403

Query: 244 G 246
           G
Sbjct: 404 G 404

>DAPB_ANAMM (Q5PA93) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 257

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 393 LKSCTKIAIDFVSPENVQECVKLTQQFRV 307
           L  C+ + IDF SPE + ECV +  + RV
Sbjct: 63  LFDCSDVVIDFSSPECMLECVGIASEKRV 91

>EME1_SCHPO (Q9C103) Crossover junction endonuclease eme1 (EC 3.1.22.-)|
           (Essential meiotic endonuclease 1)
          Length = 738

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = -3

Query: 202 FPVCLLTLSLEGFV**DKLMTTVLSKMYSAAKTSLAQ*LRKGGLCKRSVFS*KKLSS 32
           F  C L L LEG     K +   L++ Y+AA  S  + L  G L K   F+ +KL S
Sbjct: 540 FKGCKLILLLEGIPNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLES 596

>VGP_EBORS (Q89853) Structural glycoprotein precursor (Virion spike|
           glycoprotein) [Contains: GP1; GP2]
          Length = 677

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 130 STPLSSICPITQIPQETMSASKRG 201
           +TP  +  P+TQ PQET ++SK G
Sbjct: 445 TTPAPTASPMTQDPQETANSSKLG 468

>VGP_EBORE (Q66799) Structural glycoprotein precursor (Virion spike|
           glycoprotein) [Contains: GP1; GP2]
          Length = 677

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 130 STPLSSICPITQIPQETMSASKRG 201
           +TP  +  P+TQ PQET ++SK G
Sbjct: 445 TTPAPTTSPMTQDPQETANSSKPG 468

>MEF2D_XENLA (Q03413) Myocyte-specific enhancer factor 2D homolog (Serum|
           response factor-like protein 1) (SL-1)
          Length = 498

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 123 ILLNTVVINLSYHTNPSRDNVSKQTGKSGNAPSECSRHDQRH 248
           + +NT  IN+S    P+  N  + TG     P  C  H  RH
Sbjct: 401 LTVNTNPINISIKREPASPNRERSTG----TPLSCFSHQSRH 438

>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 24)
           (Ubiquitin-specific-processing protease 24)
           (Deubiquitinating enzyme 24)
          Length = 1870

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 378 KIAIDFVSPENVQECVKLTQQFRVLPKNPRAKEDKLEVKKMII 250
           KIA++    E   E ++L   +  +  NPR K+D + + K  I
Sbjct: 78  KIAMESPDEEIASEAIQLIINYSYINLNPRLKKDSVSLHKKFI 120

>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2|
          Length = 1334

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 28   FLSSTFSKRTPIFCIVHLSSVIVPERFWQHYTFYSTPLSSICP 156
            FL++T  +RTP +  + +SSVIV      + T  ST +SS+ P
Sbjct: 881  FLANTLQRRTPKYTDLPMSSVIVNTD--ANGTDESTQISSLAP 921


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,294,943
Number of Sequences: 219361
Number of extensions: 1070261
Number of successful extensions: 2602
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2602
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)