ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450893.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
2dbj|AK059445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5gb|AC153907.1| Mus musculus BAC RP23-205F6 (Roswell Park Cancer... 42 1.4
6gb|AC153985.4| Mus musculus 6 BAC RP24-507D15 (Roswell Park Canc... 42 1.4
7gb|AC101391.15| Mus musculus chromosome 5, clone RP23-119E13, co... 42 1.4
8gb|AC118610.9| Mus musculus chromosome 6, clone RP23-178I17, com... 42 1.4
9gb|AC164532.4| Mus musculus chromosome 7, clone RP24-64B10, comp... 42 1.4
10gb|AC074230.31| Mus musculus strain 129/Sv clone ct7-596k8b map ... 42 1.4
11gb|AC151985.2| Mus musculus BAC clone RP23-381C14 from chromosom... 42 1.4
12emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
13gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 m... 42 1.4
14dbj|AK142100.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 42 1.4
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
16emb|BX088692.7| Zebrafish DNA sequence from clone CH211-208A20 i... 42 1.4
17dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
19gb|AC171970.3| Mus musculus BAC RP23-116G8 (Roswell Park Cancer... 42 1.4
20ref|NM_111640.1| Arabidopsis thaliana transcription factor AT3G0... 40 5.4
21gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section ... 40 5.4
22gb|AC160962.2| Mus musculus BAC clone RP24-308N16 from chromosom... 40 5.4
23gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 5.4
24ref|XM_730693.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.4
25ref|XM_733822.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.4
26ref|XM_741085.1| Plasmodium chabaudi chabaudi coatamer protein, ... 40 5.4
27gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete se... 40 5.4
28emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chro... 40 5.4
29emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on ch... 40 5.4
30emb|AL136171.17| Human DNA sequence from clone RP4-584N17 on chr... 40 5.4
31gb|AC160115.2| Mus musculus BAC clone RP23-473K23 from chromosom... 40 5.4
32gb|AY034579.1| Mus musculus cathepsin J (Ctsj) gene, complete cds 40 5.4
33gb|AC024230.5| Homo sapiens BAC clone RP11-96B10 from 4, complet... 40 5.4
34dbj|AK122150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
35emb|CR855395.11| Zebrafish DNA sequence from clone CH211-106P4 i... 40 5.4
36dbj|AK059145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
37emb|AL110505.5|CNS01DRA Human chromosome 14 DNA sequence BAC R-8... 40 5.4
38dbj|AP004545.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.4
39dbj|D10680.1|CBEPVTK Choristoneura biennis entomopoxvirus genomi... 40 5.4 
>ref|XM_450893.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1290

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 110/135 (81%)
 Strand = Plus / Minus

                                                                        
Query: 268  ctctaatttatcttcttttgccctggggttcttaggaagcacacggaattgttgagttaa 327
            ||||||||| |||||||| |||||| |||||||||||||    ||||| |  |  |||||
Sbjct: 1140 ctctaatttgtcttctttggccctgtggttcttaggaagtcttcggaagtcctcggttaa 1081

                                                                        
Query: 328  cttgacacactcctggacattctcaggtgatacaaaatctatagcaattttcgtgcaaga 387
              ||| ||||||||  |||||||| |||||||||||||| |  ||||| || ||||| ||
Sbjct: 1080 gctgagacactccttaacattctcgggtgatacaaaatccaaggcaatcttggtgcagga 1021

                           
Query: 388  cttgagattccgtac 402
            ||| |||||||||||
Sbjct: 1020 cttaagattccgtac 1006
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>dbj|AK059445.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A06, full
            insert sequence
          Length = 1290

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 110/135 (81%)
 Strand = Plus / Minus

                                                                        
Query: 268  ctctaatttatcttcttttgccctggggttcttaggaagcacacggaattgttgagttaa 327
            ||||||||| |||||||| |||||| |||||||||||||    ||||| |  |  |||||
Sbjct: 1140 ctctaatttgtcttctttggccctgtggttcttaggaagtcttcggaagtcctcggttaa 1081

                                                                        
Query: 328  cttgacacactcctggacattctcaggtgatacaaaatctatagcaattttcgtgcaaga 387
              ||| ||||||||  |||||||| |||||||||||||| |  ||||| || ||||| ||
Sbjct: 1080 gctgagacactccttaacattctcgggtgatacaaaatccaaggcaatcttggtgcagga 1021

                           
Query: 388  cttgagattccgtac 402
            ||| |||||||||||
Sbjct: 1020 cttaagattccgtac 1006
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                            
Query: 266      acctctaatttatcttcttttgccctggggttcttaggaagcacacggaattgttgagtt 325
                ||||||||||| |||||||| |||||| |||||||||||||    ||||| |  |  |||
Sbjct: 13544340 acctctaatttgtcttctttggccctgtggttcttaggaagtcttcggaagtcctcggtt 13544281

                                                         
Query: 326      aacttgacacactcctggacattctcaggtgatacaaaatc 366
                ||  ||| ||||||||  |||||||| ||||||||||||||
Sbjct: 13544280 aagctgagacactccttaacattctcgggtgatacaaaatc 13544240



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 334      acactcctggacattctcaggtgatacaaaatc 366
                ||||||||  |||||||| ||||||||||||||
Sbjct: 13305967 acactccttaacattctcgggtgatacaaaatc 13305935
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>dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1175F05
          Length = 126842

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                          
Query: 266    acctctaatttatcttcttttgccctggggttcttaggaagcacacggaattgttgagtt 325
              ||||||||||| |||||||| |||||| |||||||||||||    ||||| |  |  |||
Sbjct: 119268 acctctaatttgtcttctttggccctgtggttcttaggaagtcttcggaagtcctcggtt 119209

                                                       
Query: 326    aacttgacacactcctggacattctcaggtgatacaaaatc 366
              ||  ||| ||||||||  |||||||| ||||||||||||||
Sbjct: 119208 aagctgagacactccttaacattctcgggtgatacaaaatc 119168
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>gb|AC153907.1| Mus musculus  BAC RP23-205F6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196286

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 269    tctaatttatcttcttttgcc 289
              |||||||||||||||||||||
Sbjct: 172598 tctaatttatcttcttttgcc 172618
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>gb|AC153985.4| Mus musculus 6 BAC RP24-507D15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 148264

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   tctaatttatcttcttttgcc 289
             |||||||||||||||||||||
Sbjct: 53407 tctaatttatcttcttttgcc 53427
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>gb|AC101391.15| Mus musculus chromosome 5, clone RP23-119E13, complete sequence
          Length = 209590

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 283    ttttgccctggggttcttaggaagc 307
              |||||||||||||| ||||||||||
Sbjct: 198779 ttttgccctggggtacttaggaagc 198755
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>gb|AC118610.9| Mus musculus chromosome 6, clone RP23-178I17, complete sequence
          Length = 255673

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 351   caggtgatacaaaatctatag 371
             |||||||||||||||||||||
Sbjct: 41716 caggtgatacaaaatctatag 41736
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>gb|AC164532.4| Mus musculus chromosome 7, clone RP24-64B10, complete sequence
          Length = 206573

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 263    ttcacctctaatttatcttcttttg 287
              |||||||||||||| ||||||||||
Sbjct: 108216 ttcacctctaatttttcttcttttg 108240
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>gb|AC074230.31| Mus musculus strain 129/Sv clone ct7-596k8b map 7, complete sequence
          Length = 91251

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 263  ttcacctctaatttatcttcttttg 287
            |||||||||||||| ||||||||||
Sbjct: 1380 ttcacctctaatttttcttcttttg 1404
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>gb|AC151985.2| Mus musculus BAC clone RP23-381C14 from chromosome 5, complete sequence
          Length = 204862

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 283    ttttgccctggggttcttaggaagc 307
              |||||||||||||| ||||||||||
Sbjct: 128130 ttttgccctggggtacttaggaagc 128106
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
              complete sequence
          Length = 167988

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 318    gttgagttaacttgacacact 338
              |||||||||||||||||||||
Sbjct: 165475 gttgagttaacttgacacact 165455
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>gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 map 7, complete
            sequence
          Length = 220077

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 263  ttcacctctaatttatcttcttttg 287
            |||||||||||||| ||||||||||
Sbjct: 4556 ttcacctctaatttttcttcttttg 4532
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>dbj|AK142100.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230034P12 product:unclassifiable, full
            insert sequence
          Length = 3236

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  caggtgatacaaaatctatag 371
            |||||||||||||||||||||
Sbjct: 1719 caggtgatacaaaatctatag 1739
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 318      gttgagttaacttgacacact 338
                |||||||||||||||||||||
Sbjct: 23448154 gttgagttaacttgacacact 23448134
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>emb|BX088692.7| Zebrafish DNA sequence from clone CH211-208A20 in linkage group 7,
             complete sequence
          Length = 210074

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 344   acattctcaggtgatacaaaa 364
             |||||||||||||||||||||
Sbjct: 53195 acattctcaggtgatacaaaa 53175
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>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0055N01
          Length = 154783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 334    acactcctggacattctcaggtgatacaaaatc 366
              ||||||||  |||||||| ||||||||||||||
Sbjct: 127401 acactccttaacattctcgggtgatacaaaatc 127369
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>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
            complete sequence
          Length = 139298

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 318  gttgagttaacttgacacact 338
            |||||||||||||||||||||
Sbjct: 4057 gttgagttaacttgacacact 4037
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>gb|AC171970.3| Mus musculus  BAC RP23-116G8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 193415

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   tctaatttatcttcttttgcc 289
             |||||||||||||||||||||
Sbjct: 63847 tctaatttatcttcttttgcc 63867
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>ref|NM_111640.1| Arabidopsis thaliana transcription factor AT3G07610 mRNA, complete
            cds
          Length = 3084

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 253  tatcatcttcttcacctctaatttatcttcttttgc 288
            |||||||||||| ||| |||| || |||||||||||
Sbjct: 2637 tatcatcttcttaacccctaacttgtcttcttttgc 2602
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>gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete
             sequence
          Length = 260929

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 35/39 (89%), Gaps = 2/39 (5%)
 Strand = Plus / Plus

                                                    
Query: 248   tatattatcatcttcttcacctctaatttatcttctttt 286
             |||||||||||||||||||  |||| ||| |||||||||
Sbjct: 28563 tatattatcatcttcttca--tctattttttcttctttt 28599
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>gb|AC160962.2| Mus musculus BAC clone RP24-308N16 from chromosome 13, complete sequence
          Length = 147866

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    ctaatttatcttcttttgcc 289
              ||||||||||||||||||||
Sbjct: 147120 ctaatttatcttcttttgcc 147139
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>gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 9
             of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   aatgctccttcagaatgttc 229
             ||||||||||||||||||||
Sbjct: 52552 aatgctccttcagaatgttc 52571
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>ref|XM_730693.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301605.00.0)
           partial mRNA
          Length = 702

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 atatattatcatcttcttca 266
           ||||||||||||||||||||
Sbjct: 151 atatattatcatcttcttca 132
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>ref|XM_733822.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300592.00.0)
           partial mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 atattatcatcttcttcacc 268
           ||||||||||||||||||||
Sbjct: 530 atattatcatcttcttcacc 511
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>ref|XM_741085.1| Plasmodium chabaudi chabaudi coatamer protein, beta subunit
            (PC000888.02.0) partial mRNA
          Length = 3750

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  atatattatcatcttcttca 266
            ||||||||||||||||||||
Sbjct: 2632 atatattatcatcttcttca 2613
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>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence
          Length = 89884

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   gctcaactttttctaagaga 54
            ||||||||||||||||||||
Sbjct: 8403 gctcaactttttctaagaga 8422
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>emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chromosome 13, complete
            sequence
          Length = 129332

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  tcatcaatttgtcctatcac 161
            ||||||||||||||||||||
Sbjct: 7330 tcatcaatttgtcctatcac 7311
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>emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on chromosome 13q33.1-33.3,
             complete sequence
          Length = 144152

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   aatgctccttcagaatgttc 229
             ||||||||||||||||||||
Sbjct: 13528 aatgctccttcagaatgttc 13547
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>emb|AL136171.17| Human DNA sequence from clone RP4-584N17 on chromosome 1q42.2-43
             Contains part of the DISC1 gene for disrupted in
             schizophrenia 1, complete sequence
          Length = 133968

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   ttatcatcttcttcacctct 271
             ||||||||||||||||||||
Sbjct: 56185 ttatcatcttcttcacctct 56204
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>gb|AC160115.2| Mus musculus BAC clone RP23-473K23 from chromosome 13, complete
            sequence
          Length = 182345

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  ctaatttatcttcttttgcc 289
            ||||||||||||||||||||
Sbjct: 7819 ctaatttatcttcttttgcc 7838
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>gb|AY034579.1| Mus musculus cathepsin J (Ctsj) gene, complete cds
          Length = 19094

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  ctaatttatcttcttttgcc 289
            ||||||||||||||||||||
Sbjct: 4163 ctaatttatcttcttttgcc 4144
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>gb|AC024230.5| Homo sapiens BAC clone RP11-96B10 from 4, complete sequence
          Length = 160269

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   atatattatcatcttcttca 266
             ||||||||||||||||||||
Sbjct: 44919 atatattatcatcttcttca 44938
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>dbj|AK122150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033142F05, full
            insert sequence
          Length = 4828

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 257  atcttcttcacctctaatttatcttcttttgccctg 292
            |||||||| | ||||| |||||||||||| ||||||
Sbjct: 4356 atcttcttaatctctagtttatcttctttagccctg 4321
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>emb|CR855395.11| Zebrafish DNA sequence from clone CH211-106P4 in linkage group 18,
             complete sequence
          Length = 55248

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   gtaatgctccttcagaatgttcac 231
             |||| |||||||||||||||||||
Sbjct: 41953 gtaaagctccttcagaatgttcac 41930
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>dbj|AK059145.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A12, full
            insert sequence
          Length = 1655

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 257  atcttcttcacctctaatttatcttcttttgccctg 292
            |||||||| | ||||| |||||||||||| ||||||
Sbjct: 1183 atcttcttaatctctagtttatcttctttagccctg 1148
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>emb|AL110505.5|CNS01DRA Human chromosome 14 DNA sequence BAC R-816J8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198441

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    atttatcttcttttgccctg 292
              ||||||||||||||||||||
Sbjct: 102216 atttatcttcttttgccctg 102235
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>dbj|AP004545.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT26E16, TM0103,
             complete sequence
          Length = 100595

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 338   tcctggacattctcaggtgatacaaaatctatagcaattttcgtgcaagact 389
             ||||| |||||||||||||| ||||| || | ||| | |||| |||||||||
Sbjct: 98081 tcctgaacattctcaggtgaaacaaagtccagagccactttcatgcaagact 98030
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>dbj|D10680.1|CBEPVTK Choristoneura biennis entomopoxvirus genomic DNA for thymidine
           kinase, complete cds
          Length = 756

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 249 atattatcatcttcttcacctcta 272
           ||||||||||||||||||| ||||
Sbjct: 241 atattatcatcttcttcacatcta 218


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,405,744
Number of Sequences: 3902068
Number of extensions: 4405744
Number of successful extensions: 84407
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84289
Number of HSP's gapped (non-prelim): 119
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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