>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 37   SSAQG*PSNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMA 177
            S+A   PSNS+P ++          K T   +++ VTD  SVTTT A
Sbjct: 1139 SAALAKPSNSEPITTVTSNTTTITSKPTNVIASSSVTDAPSVTTTNA 1185

>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor|
          Length = 317

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 37  SSAQG*PSNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASR 183
           SS+   PS+S   SS+  +   S    +++SS++  + KSS +++ +S+
Sbjct: 159 SSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSK 207

>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1|
          Length = 254

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  PSNSDPSSSTREREGYSKKK*T-RASSTNKVTDKSSVTTTMAS 180
           P++S PS+ST      S    T R++ST   T +SS TTT  S
Sbjct: 92  PTHSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATS 134

>VIAA_ERWCT (Q6DB94) Protein viaA (VWA-domain protein interacting with AAA|
           ATPase)
          Length = 492

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 158 DDLSVTLFVEDALVYFFLLYPSL 90
           DDL VTL     L +FF  YPSL
Sbjct: 20  DDLVVTLMATPQLAFFFEKYPSL 42

>CENPC_HUMAN (Q03188) Centromere protein C 1 (CENP-C) (Centromere autoantigen C)|
          Length = 943

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 55  PSNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVS 192
           P      SSTR+ +  SKKK   + S NK+  +   +T   SR +S
Sbjct: 479 PPVGSKKSSTRKDKEESKKKRFSSESKNKLVPEEVTSTVTKSRRIS 524


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,069,447
Number of Sequences: 219361
Number of extensions: 334915
Number of successful extensions: 1327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)