ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110599.1| Zea mays CL20165_1 mRNA sequence 88 2e-14
2ref|NM_197912.1| Oryza sativa (japonica cultivar-group) putative... 80 5e-12
3gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 80 5e-12
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
5dbj|AK105726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
6dbj|AK099267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
7dbj|AK099219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
8dbj|AK070527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 80 5e-12
10gb|AC147024.2| Pan troglodytes BAC clone RP43-89L5 from 7, compl... 44 0.28
11gb|AC102075.7| Mus musculus chromosome 5, clone RP23-389F20, com... 42 1.1
12gb|AC142406.2| Mus musculus BAC clone RP24-531P16 from chromosom... 42 1.1
13gb|AC108798.11| Mus musculus chromosome 5, clone RP23-419N6, com... 42 1.1
14gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, comp... 42 1.1
15emb|CR545470.5| Zebrafish DNA sequence from clone CH211-175E15 i... 42 1.1
16gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, comple... 42 1.1
17emb|AL591409.3| Human DNA sequence from clone RP11-161K18 on chr... 42 1.1
18gb|AC087238.25| Homo sapiens 12 BAC RP11-174M10 (Roswell Park Ca... 42 1.1
19gb|AC093514.2| Homo sapiens chromosome 16 clone CTD-2517O22, com... 42 1.1
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21gb|AC026462.5| Homo sapiens chromosome 16 clone RP11-297L17, com... 42 1.1
22dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
23emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in ... 42 1.1
24gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete s... 42 1.1
25gb|AC134606.4| Mus musculus BAC clone RP23-52K6 from 9, complete... 42 1.1
26gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 42 1.1
27gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 40 4.4
28gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 4.4
29gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3... 40 4.4
30gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosom... 40 4.4
31gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosom... 40 4.4
32emb|CR381607.8| Zebrafish DNA sequence from clone CH211-125I6 in... 40 4.4
33emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chr... 40 4.4
34emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in... 40 4.4
35emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 4.4
36gb|AC020656.33| Homo sapiens 12 BAC RP11-1143G9 (Roswell Park Ca... 40 4.4
37gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, com... 40 4.4
38emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 40 4.4
39emb|CR352283.6| Zebrafish DNA sequence from clone CH211-105M14 i... 40 4.4
40emb|BX322584.16| Zebrafish DNA sequence from clone RP71-27M6 in ... 40 4.4
41emb|CR388175.9| Zebrafish DNA sequence from clone DKEY-63B1 in l... 40 4.4
42ref|NM_201204.1| Danio rerio rhomboid, veinlet-like 2 (Drosophil... 40 4.4
43gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cance... 40 4.4
44gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Ho... 40 4.4
45emb|AL954734.15| Zebrafish DNA sequence from clone DKEY-11F24 in... 40 4.4
46emb|BX649300.4| Zebrafish DNA sequence from clone CH211-195I16 i... 40 4.4
47emb|BX323060.5| Zebrafish DNA sequence from clone DKEY-27K4 in l... 40 4.4
48dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
49gb|AC092959.6| Homo sapiens 3 BAC RP11-649A16 (Roswell Park Canc... 40 4.4
50emb|BX294379.5| Zebrafish DNA sequence from clone DKEY-7A20 in l... 40 4.4
51gb|BC048048.1| Danio rerio rhomboid, veinlet-like 2 (Drosophila)... 40 4.4
52emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 4.4
53emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in ... 40 4.4
54gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complet... 40 4.4
55emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, c... 40 4.4 
>gb|AY110599.1| Zea mays CL20165_1 mRNA sequence
          Length = 722

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                       
Query: 223 gccgtgtacacaacgaagttcaccgcgccgatcccagcccacagccagaagtagtagtca 282
           ||||||||||| ||| |||||||| | | |||||| | ||||||||||||||||||||| 
Sbjct: 417 gccgtgtacacgacgtagttcaccacactgatccccgtccacagccagaagtagtagtcc 358

                                                       
Query: 283 agatgcccgtcgttcaagtcggcgggaagccagcccttcccgcc 326
           || || |||||||| | ||| ||||| ||||||||||| |||||
Sbjct: 357 aggtggccgtcgttgaggtcagcggggagccagcccttgccgcc 314
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>ref|NM_197912.1| Oryza sativa (japonica cultivar-group) putative peptide transporter
            (OSJNBa0056G17.8), mRNA
          Length = 1748

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
            ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 1714 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 1655

                                                                    
Query: 265  agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
            |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 1654 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 1599
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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
             sequence
          Length = 139999

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                         
Query: 205   gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
             ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 51852 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 51793

                                                                     
Query: 265   agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
             |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 51792 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 51737
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                            
Query: 205      gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
                ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 22597183 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 22597124

                                                                        
Query: 265      agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
                |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 22597123 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 22597068
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>dbj|AK105726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-G10, full
            insert sequence
          Length = 1942

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
            ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 1771 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 1712

                                                                    
Query: 265  agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
            |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 1711 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 1656
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>dbj|AK099267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P15, full
            insert sequence
          Length = 1938

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
            ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 1761 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 1702

                                                                    
Query: 265  agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
            |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 1701 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 1646
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>dbj|AK099219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013086I05, full
            insert sequence
          Length = 1880

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
            ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 1779 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 1720

                                                                    
Query: 265  agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
            |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 1719 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 1664
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>dbj|AK070527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060H09, full
            insert sequence
          Length = 1950

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
            ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 1779 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 1720

                                                                    
Query: 265  agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
            |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 1719 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 1664
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                            
Query: 205      gtataattcttcgcgaaggccgtgtacacaacgaagttcaccgcgccgatcccagcccac 264
                ||||||||||| || ||||| | |||||| || ||||| |  |||| |||||| | ||| 
Sbjct: 22609651 gtataattcttggcaaaggcggcgtacaccacaaagttgatggcgctgatccccgtccag 22609592

                                                                        
Query: 265      agccagaagtagtagtcaagatgcccgtcgttcaagtcggcgggaagccagccctt 320
                |||||||| |||||||| ||||| |||||||| | ||||||||| |||||||||||
Sbjct: 22609591 agccagaaatagtagtccagatggccgtcgttgaggtcggcggggagccagccctt 22609536
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>gb|AC147024.2| Pan troglodytes BAC clone RP43-89L5 from 7, complete sequence
          Length = 162174

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 34    ttgtgtttcaaagaaacattttattc 59
             |||| |||||||||||||||||||||
Sbjct: 78864 ttgtatttcaaagaaacattttattc 78839
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>gb|AC102075.7| Mus musculus chromosome 5, clone RP23-389F20, complete sequence
          Length = 208311

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    tcccagcccacagccagaagt 274
              |||||||||||||||||||||
Sbjct: 141976 tcccagcccacagccagaagt 141956
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>gb|AC142406.2| Mus musculus BAC clone RP24-531P16 from chromosome 9, complete sequence
          Length = 169938

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    attttattcaaatggacacaa 71
             |||||||||||||||||||||
Sbjct: 15384 attttattcaaatggacacaa 15364
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>gb|AC108798.11| Mus musculus chromosome 5, clone RP23-419N6, complete sequence
          Length = 211603

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    tcccagcccacagccagaagt 274
              |||||||||||||||||||||
Sbjct: 166885 tcccagcccacagccagaagt 166865
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>gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, complete sequence
          Length = 204127

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    aaagctgtattgtagacagta 124
              |||||||||||||||||||||
Sbjct: 137226 aaagctgtattgtagacagta 137246
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>emb|CR545470.5| Zebrafish DNA sequence from clone CH211-175E15 in linkage group 15,
            complete sequence
          Length = 38647

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 47   aaacattttattcaaatggacacaa 71
            |||||||||||||||||| ||||||
Sbjct: 9300 aaacattttattcaaatgaacacaa 9324
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>gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, complete sequence
          Length = 203403

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   aaagctgtattgtagacagta 124
             |||||||||||||||||||||
Sbjct: 66300 aaagctgtattgtagacagta 66280
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>emb|AL591409.3| Human DNA sequence from clone RP11-161K18 on chromosome X, complete
             sequence
          Length = 133516

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    caaagaaacattttattcaaa 62
             |||||||||||||||||||||
Sbjct: 32673 caaagaaacattttattcaaa 32653
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>gb|AC087238.25| Homo sapiens 12 BAC RP11-174M10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175998

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     caaagaaacattttattcaaa 62
              |||||||||||||||||||||
Sbjct: 112191 caaagaaacattttattcaaa 112211
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>gb|AC093514.2| Homo sapiens chromosome 16 clone CTD-2517O22, complete sequence
          Length = 147330

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 253   atcccagcccacagccagaagtagt 277
             ||||||||| |||||||||||||||
Sbjct: 91280 atcccagccaacagccagaagtagt 91256
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 89      atatttaattacatcaaagct 109
               |||||||||||||||||||||
Sbjct: 3387916 atatttaattacatcaaagct 3387896
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>gb|AC026462.5| Homo sapiens chromosome 16 clone RP11-297L17, complete sequence
          Length = 179640

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 253   atcccagcccacagccagaagtagt 277
             ||||||||| |||||||||||||||
Sbjct: 34929 atcccagccaacagccagaagtagt 34953
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    atatttaattacatcaaagct 109
             |||||||||||||||||||||
Sbjct: 27736 atatttaattacatcaaagct 27716
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>emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in linkage group 15,
            complete sequence
          Length = 185137

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 47   aaacattttattcaaatggacacaa 71
            |||||||||||||||||| ||||||
Sbjct: 7290 aaacattttattcaaatgaacacaa 7314
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>gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete sequence
          Length = 158347

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   gtattgtagacagtacataca 130
             |||||||||||||||||||||
Sbjct: 50496 gtattgtagacagtacataca 50516
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>gb|AC134606.4| Mus musculus BAC clone RP23-52K6 from 9, complete sequence
          Length = 171495

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    attttattcaaatggacacaa 71
             |||||||||||||||||||||
Sbjct: 30396 attttattcaaatggacacaa 30416
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 110     gtattgtagacagtacataca 130
               |||||||||||||||||||||
Sbjct: 1274640 gtattgtagacagtacataca 1274660
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>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    aagccagcccttcccgccgc 328
              ||||||||||||||||||||
Sbjct: 290156 aagccagcccttcccgccgc 290137
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 118     gacagtacatacacaacaaa 137
               ||||||||||||||||||||
Sbjct: 1031249 gacagtacatacacaacaaa 1031268
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>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
          Length = 127380

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   gacagtacatacacaacaaa 137
             ||||||||||||||||||||
Sbjct: 73250 gacagtacatacacaacaaa 73269
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>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence
          Length = 217754

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     aaagaaacattttattcaaa 62
              ||||||||||||||||||||
Sbjct: 171588 aaagaaacattttattcaaa 171607
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>gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosome 3, complete sequence
          Length = 187545

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 33    tttgtgtttcaaagaaacattttattca 60
             ||||||||||||| | ||||||||||||
Sbjct: 32200 tttgtgtttcaaatagacattttattca 32227
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>emb|CR381607.8| Zebrafish DNA sequence from clone CH211-125I6 in linkage group 7,
             complete sequence
          Length = 94930

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cttcatttgtgtttcaaaga 47
             ||||||||||||||||||||
Sbjct: 68568 cttcatttgtgtttcaaaga 68587
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>emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chromosome 13 Contains
             part of a novel gene (KIAA0916)amd two novel genes,
             complete sequence
          Length = 97477

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tgcttcatttgtgtttcaaa 45
             ||||||||||||||||||||
Sbjct: 50920 tgcttcatttgtgtttcaaa 50939
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>emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in linkage group 23,
             complete sequence
          Length = 110120

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    ttgcttcatttgtgtttcaaagaa 48
             |||||||||||||||| |||||||
Sbjct: 94259 ttgcttcatttgtgttacaaagaa 94282
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    cacaacaaagaggataagaa 148
              ||||||||||||||||||||
Sbjct: 548910 cacaacaaagaggataagaa 548929
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>gb|AC020656.33| Homo sapiens 12 BAC RP11-1143G9 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 123070

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaagaaacattttattcaaa 62
             ||||||||||||||||||||
Sbjct: 70640 aaagaaacattttattcaaa 70621
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>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence
          Length = 246033

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tgtgtttcaaagaaacattt 54
             ||||||||||||||||||||
Sbjct: 14666 tgtgtttcaaagaaacattt 14647
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    catttgtgtttcaaagaaac 50
             ||||||||||||||||||||
Sbjct: 10962 catttgtgtttcaaagaaac 10943
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>emb|CR352283.6| Zebrafish DNA sequence from clone CH211-105M14 in linkage group 12,
              complete sequence
          Length = 161750

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cttcatttgtgtttcaaaga 47
              ||||||||||||||||||||
Sbjct: 123363 cttcatttgtgtttcaaaga 123344
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>emb|BX322584.16| Zebrafish DNA sequence from clone RP71-27M6 in linkage group 14,
             complete sequence
          Length = 144727

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    aaagaaacattttattcaaatgga 66
             |||||||| |||||||||||||||
Sbjct: 30953 aaagaaactttttattcaaatgga 30976
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>emb|CR388175.9| Zebrafish DNA sequence from clone DKEY-63B1 in linkage group 20, complete
              sequence
          Length = 207204

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     cttcatttgtgtttcaaaga 47
              ||||||||||||||||||||
Sbjct: 144987 cttcatttgtgtttcaaaga 145006
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>ref|NM_201204.1| Danio rerio rhomboid, veinlet-like 2 (Drosophila) (rhbdl2), mRNA
          Length = 2266

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   cttcatttgtgtttcaaaga 47
            ||||||||||||||||||||
Sbjct: 1118 cttcatttgtgtttcaaaga 1099
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>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184696

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aagaaacattttattcaaat 63
             ||||||||||||||||||||
Sbjct: 13641 aagaaacattttattcaaat 13660
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>gb|AC131405.5| Rattus norvegicus  BAC CH230-179I7 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 217197

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 43    aaagaaacattttattcaaatggacaca 70
             ||||||||||||| || |||||||||||
Sbjct: 93989 aaagaaacattttcttgaaatggacaca 93962
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>emb|AL954734.15| Zebrafish DNA sequence from clone DKEY-11F24 in linkage group 6,
            complete sequence
          Length = 116532

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   cttcatttgtgtttcaaaga 47
            ||||||||||||||||||||
Sbjct: 6482 cttcatttgtgtttcaaaga 6501
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>emb|BX649300.4| Zebrafish DNA sequence from clone CH211-195I16 in linkage group 23,
              complete sequence
          Length = 202963

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cttcatttgtgtttcaaaga 47
              ||||||||||||||||||||
Sbjct: 145920 cttcatttgtgtttcaaaga 145901
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>emb|BX323060.5| Zebrafish DNA sequence from clone DKEY-27K4 in linkage group 7,
             complete sequence
          Length = 251050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cttcatttgtgtttcaaaga 47
             ||||||||||||||||||||
Sbjct: 48126 cttcatttgtgtttcaaaga 48145
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 31       catttgtgtttcaaagaaac 50
                ||||||||||||||||||||
Sbjct: 31189361 catttgtgtttcaaagaaac 31189342
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>gb|AC092959.6| Homo sapiens 3 BAC RP11-649A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179714

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aagaaacattttattcaaat 63
             ||||||||||||||||||||
Sbjct: 36491 aagaaacattttattcaaat 36472
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>emb|BX294379.5| Zebrafish DNA sequence from clone DKEY-7A20 in linkage group 1, complete
              sequence
          Length = 214290

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    acacaacaaagaggataaga 147
              ||||||||||||||||||||
Sbjct: 200430 acacaacaaagaggataaga 200449
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>gb|BC048048.1| Danio rerio rhomboid, veinlet-like 2 (Drosophila), mRNA (cDNA clone
            MGC:55533 IMAGE:2642120), complete cds
          Length = 2266

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   cttcatttgtgtttcaaaga 47
            ||||||||||||||||||||
Sbjct: 1118 cttcatttgtgtttcaaaga 1099
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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    cttcatttgtgtttcaaaga 47
             ||||||||||||||||||||
Sbjct: 86283 cttcatttgtgtttcaaaga 86264
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>emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in linkage group 11,
              complete sequence
          Length = 220631

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ttcatttgtgtttcaaagaa 48
              ||||||||||||||||||||
Sbjct: 211350 ttcatttgtgtttcaaagaa 211331
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>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence
          Length = 135567

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 33     tttgtgtttcaaagaaacattttattca 60
              ||||||||||||| | ||||||||||||
Sbjct: 106600 tttgtgtttcaaatagacattttattca 106627
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>emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, complete sequence
          Length = 142570

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    ttgcttcatttgtgtttcaaagaa 48
             |||||||||||||||| |||||||
Sbjct: 48652 ttgcttcatttgtgttacaaagaa 48675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,240,040
Number of Sequences: 3902068
Number of extensions: 3240040
Number of successful extensions: 67047
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66875
Number of HSP's gapped (non-prelim): 172
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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