ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476397.1| Oryza sativa (japonica cultivar-group), mRNA 129 7e-27
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
3dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
4dbj|AK070584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
5dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
6gb|AY110473.1| Zea mays CL10705_-2 mRNA sequence 90 6e-15
7emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.3
8emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 42 1.3
9gb|AC106705.7| Homo sapiens 3 BAC RP11-262L17 (Roswell Park Canc... 42 1.3
10emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.3
11gb|DQ397610.1| Cenarchaeum symbiosum clone C14A09, complete sequ... 42 1.3
12dbj|AK002209.1| Homo sapiens cDNA FLJ11347 fis, clone PLACE4000590 42 1.3
13gb|BC040823.1| Mus musculus LSM14 homolog B (SCD6, S. cerevisiae... 42 1.3
14gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, com... 42 1.3
15gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, comp... 42 1.3
16dbj|AP006103.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.3
17emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chro... 42 1.3
18ref|NM_189516.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
19gb|AC147772.1| Homo sapiens chromosome 16 clone PCR-16A04, compl... 40 5.2
20gb|AC010563.6| Drosophila melanogaster 3L BAC RP98-9M20 (Roswell... 40 5.2
21gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.2
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
23dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
24emb|AL591075.11| Mouse DNA sequence from clone RP23-159O6 on chr... 40 5.2
25dbj|AK107679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
26gb|AC009731.6|AC009731 Homo sapiens 12 BAC RP11-438N16 (Roswell ... 40 5.2
27gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 5.2
28gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, compl... 40 5.2
29gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67... 40 5.2 
>ref|XM_476397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3884

 Score =  129 bits (65), Expect = 7e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                        
Query: 182  ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 241
            |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 3548

                                                                        
Query: 242  atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 301
            |||||||| | ||| || || |||| |  |  || |||||| | || ||||||||||| |
Sbjct: 3547 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 3488

                                         
Query: 302  ctgtgcaggatctctgcgtcaggtatcac 330
            ||||  ||||||||||||||||| |||||
Sbjct: 3487 ctgttgaggatctctgcgtcagggatcac 3459



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 16   tgcactcctacttgaggtttctgcattgc 44
            |||| |||||||| |||||||||||||||
Sbjct: 3823 tgcattcctacttcaggtttctgcattgc 3795
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score =  129 bits (65), Expect = 7e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                          
Query: 182    ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 241
              |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520639 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 520580

                                                                          
Query: 242    atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 301
              |||||||| | ||| || || |||| |  |  || |||||| | || ||||||||||| |
Sbjct: 520579 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 520520

                                           
Query: 302    ctgtgcaggatctctgcgtcaggtatcac 330
              ||||  ||||||||||||||||| |||||
Sbjct: 520519 ctgttgaggatctctgcgtcagggatcac 520491



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 16     tgcactcctacttgaggtttctgcattgc 44
              |||| |||||||| |||||||||||||||
Sbjct: 520855 tgcattcctacttcaggtttctgcattgc 520827
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0585H11
          Length = 149371

 Score =  129 bits (65), Expect = 7e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                          
Query: 182    ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 241
              |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122803 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 122744

                                                                          
Query: 242    atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 301
              |||||||| | ||| || || |||| |  |  || |||||| | || ||||||||||| |
Sbjct: 122743 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 122684

                                           
Query: 302    ctgtgcaggatctctgcgtcaggtatcac 330
              ||||  ||||||||||||||||| |||||
Sbjct: 122683 ctgttgaggatctctgcgtcagggatcac 122655



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 16     tgcactcctacttgaggtttctgcattgc 44
              |||| |||||||| |||||||||||||||
Sbjct: 123019 tgcattcctacttcaggtttctgcattgc 122991
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>dbj|AK070584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062J01, full
            insert sequence
          Length = 3885

 Score =  129 bits (65), Expect = 7e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                        
Query: 182  ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 241
            |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 3549

                                                                        
Query: 242  atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 301
            |||||||| | ||| || || |||| |  |  || |||||| | || ||||||||||| |
Sbjct: 3548 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 3489

                                         
Query: 302  ctgtgcaggatctctgcgtcaggtatcac 330
            ||||  ||||||||||||||||| |||||
Sbjct: 3488 ctgttgaggatctctgcgtcagggatcac 3460



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 16   tgcactcctacttgaggtttctgcattgc 44
            |||| |||||||| |||||||||||||||
Sbjct: 3824 tgcattcctacttcaggtttctgcattgc 3796
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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1567_G09
          Length = 121388

 Score =  129 bits (65), Expect = 7e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                         
Query: 182   ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 241
             |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74551 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 74492

                                                                         
Query: 242   atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 301
             |||||||| | ||| || || |||| |  |  || |||||| | || ||||||||||| |
Sbjct: 74491 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 74432

                                          
Query: 302   ctgtgcaggatctctgcgtcaggtatcac 330
             ||||  ||||||||||||||||| |||||
Sbjct: 74431 ctgttgaggatctctgcgtcagggatcac 74403



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 16    tgcactcctacttgaggtttctgcattgc 44
             |||| |||||||| |||||||||||||||
Sbjct: 74767 tgcattcctacttcaggtttctgcattgc 74739
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>gb|AY110473.1| Zea mays CL10705_-2 mRNA sequence
          Length = 549

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                       
Query: 182 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 241
           ||||| |||| ||| ||| ||||||||||||| || |||||||||||||||||||| |||
Sbjct: 291 ccgtcagcagactccccatgcaccacctcgtccaccagctccttgaatatcgacctttcg 350

                                    
Query: 242 atctccagtatcatcccagggagct 266
           |||||||| | |||||| |||||||
Sbjct: 351 atctccagcaccatccccgggagct 375
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     acccttccagcctgtgcagga 311
               |||||||||||||||||||||
Sbjct: 2712340 acccttccagcctgtgcagga 2712320
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 64      agccagccagcgccagccagc 84
               |||||||||||||||||||||
Sbjct: 1431941 agccagccagcgccagccagc 1431961
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>gb|AC106705.7| Homo sapiens 3 BAC RP11-262L17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100464

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    gccagccagcgccagccagcc 85
             |||||||||||||||||||||
Sbjct: 88076 gccagccagcgccagccagcc 88096
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 146    cgcctcctgccgcgcctgccagccc 170
              |||||||||| ||||||||||||||
Sbjct: 866398 cgcctcctgctgcgcctgccagccc 866422



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     tttctgcattgcccacactc 52
              ||||||||||||||||||||
Sbjct: 567219 tttctgcattgcccacactc 567238
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>gb|DQ397610.1| Cenarchaeum symbiosum clone C14A09, complete sequence
          Length = 45665

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   ccacctcgtcgacgagctcct 224
             |||||||||||||||||||||
Sbjct: 25127 ccacctcgtcgacgagctcct 25147
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>dbj|AK002209.1| Homo sapiens cDNA FLJ11347 fis, clone PLACE4000590
          Length = 5667

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ccagcctatttgcctcctctc 100
           |||||||||||||||||||||
Sbjct: 53  ccagcctatttgcctcctctc 73
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>gb|BC040823.1| Mus musculus LSM14 homolog B (SCD6, S. cerevisiae), mRNA (cDNA
           clone IMAGE:4458586), partial cds
          Length = 2558

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 142 gaggcgcctcctgccgcgcct 162
           |||||||||||||||||||||
Sbjct: 87  gaggcgcctcctgccgcgcct 67
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>gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, complete sequence
          Length = 206295

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     ccagcctatttgcctcctctc 100
              |||||||||||||||||||||
Sbjct: 200383 ccagcctatttgcctcctctc 200403
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>gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, complete sequence
          Length = 159512

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    ccagcctatttgcctcctctc 100
             |||||||||||||||||||||
Sbjct: 29460 ccagcctatttgcctcctctc 29480
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>dbj|AP006103.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT11J24, TM0185,
             complete sequence
          Length = 121047

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    tatttgcctcctctcttcaga 106
             |||||||||||||||||||||
Sbjct: 60458 tatttgcctcctctcttcaga 60438
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>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete
              sequence
          Length = 193057

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 142    gaggcgcctcctgccgcgcct 162
              |||||||||||||||||||||
Sbjct: 145947 gaggcgcctcctgccgcgcct 145927
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>ref|NM_189516.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ccacctcgtcgacgagctcc 223
           ||||||||||||||||||||
Sbjct: 653 ccacctcgtcgacgagctcc 672
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>gb|AC147772.1| Homo sapiens chromosome 16 clone PCR-16A04, complete sequence
          Length = 6214

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 61   cacagccagccagcgccagccagcctat 88
            ||||||| ||||||||||||||| ||||
Sbjct: 2226 cacagccggccagcgccagccaggctat 2253
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>gb|AC010563.6| Drosophila melanogaster 3L BAC RP98-9M20 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185497

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cagccagccagcgccagcca 82
             ||||||||||||||||||||
Sbjct: 99570 cagccagccagcgccagcca 99589
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     gccgcgcctgccagcccttg 173
               ||||||||||||||||||||
Sbjct: 2401368 gccgcgcctgccagcccttg 2401387
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 204      ccacctcgtcgacgagctcc 223
                ||||||||||||||||||||
Sbjct: 43212848 ccacctcgtcgacgagctcc 43212829
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>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0020E09
          Length = 149195

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    ccacctcgtcgacgagctcc 223
              ||||||||||||||||||||
Sbjct: 100303 ccacctcgtcgacgagctcc 100284
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>emb|AL591075.11| Mouse DNA sequence from clone RP23-159O6 on chromosome 11, complete
             sequence
          Length = 159896

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   tctccagtatcatcccagggagct 266
             ||||||| ||||||||||||||||
Sbjct: 70454 tctccagaatcatcccagggagct 70431
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>dbj|AK107679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A06, full
           insert sequence
          Length = 1419

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 205 cacctcgtcgacgagctcct 224
           ||||||||||||||||||||
Sbjct: 131 cacctcgtcgacgagctcct 112
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>gb|AC009731.6|AC009731 Homo sapiens 12 BAC RP11-438N16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172749

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     ctcaatcctcacacagccag 69
              ||||||||||||||||||||
Sbjct: 162633 ctcaatcctcacacagccag 162652
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      acacagccagccagcgccag 79
               ||||||||||||||||||||
Sbjct: 1347207 acacagccagccagcgccag 1347226
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>gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, complete sequence
          Length = 213575

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tctcttcagacaagccaaat 116
              ||||||||||||||||||||
Sbjct: 140112 tctcttcagacaagccaaat 140131
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>gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67 of 83 of the complete
             sequence
          Length = 279088

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cagccagccagcgccagcca 82
             ||||||||||||||||||||
Sbjct: 55615 cagccagccagcgccagcca 55634


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,122,861
Number of Sequences: 3902068
Number of extensions: 3122861
Number of successful extensions: 64633
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64328
Number of HSP's gapped (non-prelim): 305
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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