ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20g03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein (lox gene) Length = 3123 Score = 678 bits (342), Expect = 0.0 Identities = 342/342 (100%) Strand = Plus / Minus Query: 24 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3077 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 3018 Query: 84 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3017 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 2958 Query: 144 caaagtatatcgaggctgaaaaattcccacggtccgcttcaattcactctctgcgggcta 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2957 caaagtatatcgaggctgaaaaattcccacggtccgcttcaattcactctctgcgggcta 2898 Query: 204 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2897 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 2838 Query: 264 gagctcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcg 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2837 gagctcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcg 2778 Query: 324 ccgctcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2777 ccgctcgatctcctcctcggcgcggcgcacttccgccgcgaa 2736
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 212 bits (107), Expect = 6e-52 Identities = 143/155 (92%) Strand = Plus / Minus Query: 211 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 270 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 2690 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 2631 Query: 271 tacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgctcg 330 |||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||| Sbjct: 2630 tacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggcattgcgccgctcg 2571 Query: 331 atctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||||||||||||||||||||| || |||||||| Sbjct: 2570 atctcctcctcggcgcggcgcacgtcggccgcgaa 2536
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 212 bits (107), Expect = 6e-52 Identities = 143/155 (92%) Strand = Plus / Minus Query: 211 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 270 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 22283720 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 22283661 Query: 271 tacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgctcg 330 |||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||| Sbjct: 22283660 tacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggcattgcgccgctcg 22283601 Query: 331 atctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||||||||||||||||||||| || |||||||| Sbjct: 22283600 atctcctcctcggcgcggcgcacgtcggccgcgaa 22283566
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 212 bits (107), Expect = 6e-52 Identities = 143/155 (92%) Strand = Plus / Minus Query: 211 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 270 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 34622 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 34563 Query: 271 tacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgctcg 330 |||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||| Sbjct: 34562 tacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggcattgcgccgctcg 34503 Query: 331 atctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||||||||||||||||||||| || |||||||| Sbjct: 34502 atctcctcctcggcgcggcgcacgtcggccgcgaa 34468
>ref|XM_470535.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2718 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 2651 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 2592 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 2591 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 2554
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 4174701 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 4174642 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 4174641 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 4174604
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 4174810 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 4174751 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 4174750 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 4174713
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 75338 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 75279 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 75278 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 75241
>dbj|AK109440.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A07, full insert sequence Length = 1212 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 1055 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 996 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 995 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 958
>dbj|AK121637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052A03, full insert sequence Length = 3067 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 2890 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 2831 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 2830 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 2793
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 268 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 327 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 3316 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 3257 Query: 328 tcgatctcctcctcggcgcggcgcacttccgccgcgaa 365 ||||| |||||||||||| ||||| || |||||||| Sbjct: 3256 tcgatggtctcctcggcgcgtcgcacatcggccgcgaa 3219
>ref|XM_423398.1| PREDICTED: Gallus gallus similar to cingulin (LOC425665), mRNA Length = 3681 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gccgctcgatctcctcctcggc 344 |||||||||||||||||||||| Sbjct: 3439 gccgctcgatctcctcctcggc 3418
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cgctcgatctcctcctcggc 344 |||||||||||||||||||| Sbjct: 1405896 cgctcgatctcctcctcggc 1405877
>gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene cluster, complete sequence Length = 22972 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccggcccggacgacggcgcc 261 |||||||||||||||||||| Sbjct: 3634 ccggcccggacgacggcgcc 3653
>gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, complete cds Length = 3378 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ccggcccggacgacggcgcc 261 |||||||||||||||||||| Sbjct: 2761 ccggcccggacgacggcgcc 2742
>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds Length = 1635 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 105 tcttatatgtacgtacttttccctgaga 132 |||||| ||||| ||||||||||||||| Sbjct: 189 tcttatttgtacatacttttccctgaga 162 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,230,994 Number of Sequences: 3902068 Number of extensions: 2230994 Number of successful extensions: 36637 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36460 Number of HSP's gapped (non-prelim): 175 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
