>FLII_BACSU (P23445) Flagellum-specific ATP synthase (EC 3.6.3.14)|
          Length = 440

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 87  PTDVNYCPVVVAATPRLIDRSSL---GTYVQCLN*LHDGLEWNDP 212
           PT   Y P V A  PRL++R+     GT       L DG + N+P
Sbjct: 277 PTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVDGDDMNEP 321

>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48) (His-domain-containing protein tyrosine
            phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14)
            (PTP-TD14) (Fragment)
          Length = 1499

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 364  PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 251
            PH+G L  P+P  P P   L    +  PR   P  +PV +R
Sbjct: 893  PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 933

>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48)
          Length = 1692

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 364  PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 251
            PH+G L  P+P  P P   L    +  PR   P  +PV +R
Sbjct: 1086 PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 1126

>CRX_CANFA (Q8SQ03) Cone-rod homeobox protein|
          Length = 299

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 VAATPRLIDRSSLGTYVQCLN*LHDGLEWNDPNGTYMYTWS 239
           +A +P  +   S GTY        D LE+ DP GT+ +T++
Sbjct: 246 LAQSPTSLSGQSYGTYSPV-----DSLEFKDPTGTWKFTYN 281

>YL688_MIMIV (Q5UNV2) Hypothetical protein L688|
          Length = 236

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -2

Query: 337 NPALPQPIDGLVITGSEVPRPSCSPVLLRCAVLLHVYI*V--PLGSFHSSPSCN*LRHCT 164
           +P LP P + + +  S  P PS  P+ + C V +  YI       +  SSP+   L   T
Sbjct: 42  SPCLPYPTNCVQVCTSSQPCPSPCPIPVPCPVTIVEYITTAPTATTIESSPTGMAL---T 98

Query: 163 YVPKELRSINLGVAATTTGQ*FTSV 89
            +P    SI  G     TG   T V
Sbjct: 99  PIPVGSTSIPSGTVTVITGYAATPV 123

>FAT2_DROME (Q9VW71) Putative fat-like cadherin-related tumor suppressor|
           homolog precursor
          Length = 4705

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 63  SKKYLPLTPTDVN-YCPVV--VAATPRLIDRSSLGTYVQCLN 179
           + K LP+T  DVN   PV+    AT RL + + +GT V CL+
Sbjct: 856 TSKMLPITILDVNDNRPVIQKTLATFRLTESARIGTVVHCLH 897

>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1198

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 192  GLEWNDPNGTYMYTWSSTAQRRSTGEQDGRGTSLPVITRPSIG*GRAGLGM 344
            G+ W   +GT      S AQR +T E+ GR T+ P+I   S+  G  GL +
Sbjct: 1059 GIRWLRFDGTM-----SQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNL 1104

>NARH_SHIFL (Q83RN5) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)|
          Length = 512

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 232 HGAAQRSAGAPVNRMAEAPRFLLSPGHRLAEVERGWAWTDGL 357
           H A + S   P+ R    PR L++ G R+A++E+G  W D L
Sbjct: 112 HTAPEGSKSQPIAR----PRSLIT-GERMAKIEKGPNWEDDL 148

>NARH_ECOLI (P11349) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)|
           (Nitrate reductase A beta subunit) (Quinol-nitrate
           oxidoreductase beta subunit)
          Length = 512

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 232 HGAAQRSAGAPVNRMAEAPRFLLSPGHRLAEVERGWAWTDGL 357
           H A + S   P+ R    PR L++ G R+A++E+G  W D L
Sbjct: 112 HTAPEGSKSQPIAR----PRSLIT-GERMAKIEKGPNWEDDL 148

>URIC_DROPS (P22673) Uricase (EC 1.7.3.3) (Urate oxidase)|
          Length = 345

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 33  FTS*SYKILPSKKYLPLTPTDVNYCPVVVAATPR 134
           FTS   + L +  ++  TPT V+YC VV+  TP+
Sbjct: 155 FTSIDNRSLHNHAFI-FTPTAVHYCDVVIRRTPK 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,011,038
Number of Sequences: 219361
Number of extensions: 1447253
Number of successful extensions: 3686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3686
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)