ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42 29 3.2
2TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42 27 9.4

>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 109 WCCMIKEQGIGAACTCIIARNWNCYFH 29
           WCC          C C  + N NCY++
Sbjct: 65  WCCCSWANDPNCKCCCTASSNLNCYYY 91



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>TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42|
          Length = 723

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 109 WCCMIKEQGIGAACTCIIARNWNCYFHVFERYHCK 5
           WCC          C C  + N  CY+  +E + C+
Sbjct: 65  WCCCSWANDPNCKCCCTASTNLKCYY--YESHCCR 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,968,762
Number of Sequences: 219361
Number of extensions: 926258
Number of successful extensions: 1928
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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