Clone Name | rbastl20g01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42 | 29 | 3.2 | 2 | TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42 | 27 | 9.4 |
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>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42| Length = 723 Score = 28.9 bits (63), Expect = 3.2 Identities = 9/27 (33%), Positives = 12/27 (44%) Frame = -1 Query: 109 WCCMIKEQGIGAACTCIIARNWNCYFH 29 WCC C C + N NCY++ Sbjct: 65 WCCCSWANDPNCKCCCTASSNLNCYYY 91
>TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42| Length = 723 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/35 (28%), Positives = 15/35 (42%) Frame = -1 Query: 109 WCCMIKEQGIGAACTCIIARNWNCYFHVFERYHCK 5 WCC C C + N CY+ +E + C+ Sbjct: 65 WCCCSWANDPNCKCCCTASTNLKCYY--YESHCCR 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,968,762 Number of Sequences: 219361 Number of extensions: 926258 Number of successful extensions: 1928 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1928 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)