ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineraliz... 30 2.0
2SPB8_BOVIN (Q5BIR5) Serpin B8 29 3.3
3PT1_MYCGE (P47668) Phosphoenolpyruvate-protein phosphotransferas... 28 7.4
4LTBP2_RAT (O35806) Latent transforming growth factor beta-bindin... 27 9.7
5FEOB_LEGPL (Q5WTE1) Ferrous iron transport protein B 27 9.7

>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)|
          Length = 416

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 QNWVHACGDRLCTTLQTMQ 187
           QN + ACGDRLC TL   Q
Sbjct: 67  QNRIRACGDRLCLTLSRAQ 85



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>SPB8_BOVIN (Q5BIR5) Serpin B8|
          Length = 374

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 227 ASGAEAVIA*SRICR*SGKFWAGHP 301
           A+GA AV+  SR CR   KF A HP
Sbjct: 328 AAGATAVVRNSRCCRMEPKFCADHP 352



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>PT1_MYCGE (P47668) Phosphoenolpyruvate-protein phosphotransferase (EC|
           2.7.3.9) (Phosphotransferase system, enzyme I)
          Length = 572

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 59  YMVYSIHDGLMALCNRVRPSRKINQNWVHACGDRLCTTLQTMQYVSPL*SGLDLPSAS 232
           Y+   ++  L+ L   V    K+N  W   CG+     + + QY  PL  GL L   S
Sbjct: 468 YLYQPLNPALLRLIKLVVEGGKLNNVWTGMCGE-----MASDQYAIPLLLGLGLTELS 520



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>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1764

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 119 SMVAHDCTMPLIHHVWSKPCIFRTNAQAYRN*TTHATLP 3
           SMV+  CT+PL+  +  + C      +A+ +   H  LP
Sbjct: 663 SMVSGTCTLPLVQRITKQICCCSRVGKAWGSKCEHCPLP 701



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>FEOB_LEGPL (Q5WTE1) Ferrous iron transport protein B|
          Length = 751

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 73  HT*WINGIVQSCATIEKNQSKLGSCVW*QTMYYTADHAVCQSI 201
           H  ++ GI  +  +I  N S+LGS +W       AD  + QS+
Sbjct: 601 HFDFLGGIKAAFGSIPANLSELGSALWNPVSASAADSELSQSV 643


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,673,996
Number of Sequences: 219361
Number of extensions: 1062276
Number of successful extensions: 2034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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