Clone Name | rbastl20f06 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineraliz... | 30 | 2.0 | 2 | SPB8_BOVIN (Q5BIR5) Serpin B8 | 29 | 3.3 | 3 | PT1_MYCGE (P47668) Phosphoenolpyruvate-protein phosphotransferas... | 28 | 7.4 | 4 | LTBP2_RAT (O35806) Latent transforming growth factor beta-bindin... | 27 | 9.7 | 5 | FEOB_LEGPL (Q5WTE1) Ferrous iron transport protein B | 27 | 9.7 |
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>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)| Length = 416 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +2 Query: 131 QNWVHACGDRLCTTLQTMQ 187 QN + ACGDRLC TL Q Sbjct: 67 QNRIRACGDRLCLTLSRAQ 85
>SPB8_BOVIN (Q5BIR5) Serpin B8| Length = 374 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +2 Query: 227 ASGAEAVIA*SRICR*SGKFWAGHP 301 A+GA AV+ SR CR KF A HP Sbjct: 328 AAGATAVVRNSRCCRMEPKFCADHP 352
>PT1_MYCGE (P47668) Phosphoenolpyruvate-protein phosphotransferase (EC| 2.7.3.9) (Phosphotransferase system, enzyme I) Length = 572 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +2 Query: 59 YMVYSIHDGLMALCNRVRPSRKINQNWVHACGDRLCTTLQTMQYVSPL*SGLDLPSAS 232 Y+ ++ L+ L V K+N W CG+ + + QY PL GL L S Sbjct: 468 YLYQPLNPALLRLIKLVVEGGKLNNVWTGMCGE-----MASDQYAIPLLLGLGLTELS 520
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 119 SMVAHDCTMPLIHHVWSKPCIFRTNAQAYRN*TTHATLP 3 SMV+ CT+PL+ + + C +A+ + H LP Sbjct: 663 SMVSGTCTLPLVQRITKQICCCSRVGKAWGSKCEHCPLP 701
>FEOB_LEGPL (Q5WTE1) Ferrous iron transport protein B| Length = 751 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +1 Query: 73 HT*WINGIVQSCATIEKNQSKLGSCVW*QTMYYTADHAVCQSI 201 H ++ GI + +I N S+LGS +W AD + QS+ Sbjct: 601 HFDFLGGIKAAFGSIPANLSELGSALWNPVSASAADSELSQSV 643 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,673,996 Number of Sequences: 219361 Number of extensions: 1062276 Number of successful extensions: 2034 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2034 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)