>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 4e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                            
Query: 190      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 249
                |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 32987631 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 32987572

                                                                            
Query: 250      cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 309
                |||||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || 
Sbjct: 32987571 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaata 32987512

                                       
Query: 310      gccttcttgaactctgccgaatg 332
                ||||||||||| |||||| ||||
Sbjct: 32987511 gccttcttgaattctgccaaatg 32987489



 Score =  117 bits (59), Expect = 2e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                            
Query: 190      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 249
                |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 32969862 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 32969803

                                                                            
Query: 250      cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 309
                |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 32969802 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 32969743

                                       
Query: 310      gccttcttgaactctgccgaatg 332
                |||||||||||||||||| ||||
Sbjct: 32969742 gccttcttgaactctgccaaatg 32969720

>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  133 bits (67), Expect = 4e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                         
Query: 190   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 249
             |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 53859 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 53800

                                                                         
Query: 250   cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 309
             |||||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || 
Sbjct: 53799 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaata 53740

                                    
Query: 310   gccttcttgaactctgccgaatg 332
             ||||||||||| |||||| ||||
Sbjct: 53739 gccttcttgaattctgccaaatg 53717



 Score =  117 bits (59), Expect = 2e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                         
Query: 190   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 249
             |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 36090 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 36031

                                                                         
Query: 250   cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 309
             |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 36030 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 35971

                                    
Query: 310   gccttcttgaactctgccgaatg 332
             |||||||||||||||||| ||||
Sbjct: 35970 gccttcttgaactctgccaaatg 35948

>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score =  129 bits (65), Expect = 6e-27
 Identities = 122/141 (86%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 251
            |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||||
Sbjct: 2838 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggatcg 2779

                                                                        
Query: 252  cttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatcgc 311
            |||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || ||
Sbjct: 2778 cttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaatagc 2719

                                 
Query: 312  cttcttgaactctgccgaatg 332
            ||||||||| |||||| ||||
Sbjct: 2718 cttcttgaattctgccaaatg 2698

>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
            insert sequence
          Length = 3262

 Score =  117 bits (59), Expect = 2e-23
 Identities = 122/143 (85%)
 Strand = Plus / Minus

                                                                        
Query: 190  tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 249
            |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 3047 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 2988

                                                                        
Query: 250  cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 309
            |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 2987 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 2928

                                   
Query: 310  gccttcttgaactctgccgaatg 332
            |||||||||||||||||| ||||
Sbjct: 2927 gccttcttgaactctgccaaatg 2905

>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score =  113 bits (57), Expect = 4e-22
 Identities = 120/141 (85%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 251
            |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||||
Sbjct: 2841 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggatcg 2782

                                                                        
Query: 252  cttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatcgc 311
            |||||||||||||||||| || || ||| ||||||||||    ||| | || || || ||
Sbjct: 2781 cttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatggc 2722

                                 
Query: 312  cttcttgaactctgccgaatg 332
            |||||||||||||||| ||||
Sbjct: 2721 cttcttgaactctgccaaatg 2701

>gb|AY109443.1| Zea mays CL3420_1 mRNA sequence
          Length = 1424

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 120/146 (82%)
 Strand = Plus / Plus

                                                                       
Query: 190 tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 249
           ||||||||||| ||||||| ||| ||||||||||| || |||| || ||| ||||  |||
Sbjct: 159 tgtcagtccatggtgatcctgcccggacctcccttgagtgagctgtacagcggcctcgat 218

                                                                       
Query: 250 cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 309
           || ||||||||||||||||| ||||| | | |  |||||||| ||||  | |||  ||| 
Sbjct: 219 cgtttgaagccgaatatgtctgtaattctgtacattttgggcgggtcggcttcgttgatt 278

                                     
Query: 310 gccttcttgaactctgccgaatggtt 335
           ||||||||||||||| || |||||||
Sbjct: 279 gccttcttgaactctaccaaatggtt 304

>ref|XM_320774.2| Anopheles gambiae str. PEST ENSANGP00000014036
           (ENSANGG00000011547), partial mRNA
          Length = 1506

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 296 catcctcggcgatcgccttcttgaac 321
           |||||||||||||||||||| |||||
Sbjct: 634 catcctcggcgatcgccttcgtgaac 609

>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    gagaaaaatcaatcaaaattg 138
              |||||||||||||||||||||
Sbjct: 121168 gagaaaaatcaatcaaaattg 121188

>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete
             sequence
          Length = 127959

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   gagaaaaatcaatcaaaattg 138
             |||||||||||||||||||||
Sbjct: 73150 gagaaaaatcaatcaaaattg 73170

>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ccggcctggacctcccttca 226
             ||||||||||||||||||||
Sbjct: 79761 ccggcctggacctcccttca 79780

>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   agaaaaatcaatcaaaattg 138
             ||||||||||||||||||||
Sbjct: 72527 agaaaaatcaatcaaaattg 72508

>emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chromosome 9 Contains four
              novel genes, a novel gene similar to FLJ23393. the 5' end
              of a novel gene (KIAA1529) and two CpG islands, complete
              sequence
          Length = 130244

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    aatcaatcaaaattgggttc 143
              ||||||||||||||||||||
Sbjct: 104751 aatcaatcaaaattgggttc 104770

>emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chromosome 13 Contains a
              novel pseudogene and a keratin 18 (KRT18) (K18, CYK18)
              pseudogene, complete sequence
          Length = 156442

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    agaaaaatcaatcaaaattg 138
              ||||||||||||||||||||
Sbjct: 103271 agaaaaatcaatcaaaattg 103252

>emb|AL139008.10| Human DNA sequence from clone RP11-255A11 on chromosome 9 Contains
            four novel genes, the gene for a novel protein similar to
            suppressor of G2 allele of SKP1 homolog, the gene for a
            novel protein similar to KIAA1074, a melanoma antigen
            pseudogene, a sorting nexin 18 (SNX18) pseudogene, a
            trypsin domain pseudogene, two genes for novel
            immunoglobulin domain containing proteins, the gene for a
            novel protein similar to annexin A2 (ANXA2), the gene for
            a novel protein similar to T-cell receptor beta chain V
            region proteins, a T-cell receptor beta chain V region
            protein LB2 pseudogene and two CpG islands, complete
            sequence
          Length = 159974

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  aatcaatcaaaattgggttc 143
            ||||||||||||||||||||
Sbjct: 3979 aatcaatcaaaattgggttc 3960

>emb|AJ242954.1|MMU242954 Mus musculus partial mRNA for dysferlin (dysf gene)
          Length = 5078

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  ccggcctggacctcccttca 226
            ||||||||||||||||||||
Sbjct: 3995 ccggcctggacctcccttca 4014

>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 123   aaatcaatcaaaattgggttcatg 146
             ||||||| ||||||||||||||||
Sbjct: 87668 aaatcaaacaaaattgggttcatg 87691

>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gagaaaaatcaatcaaaatt 137
             ||||||||||||||||||||
Sbjct: 32444 gagaaaaatcaatcaaaatt 32425

>dbj|AK087986.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430001M20
            product:dysferlin, full insert sequence
          Length = 2533

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  ccggcctggacctcccttca 226
            ||||||||||||||||||||
Sbjct: 1449 ccggcctggacctcccttca 1468

>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone
              BACR20B09, complete sequence
          Length = 177997

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 120    gaaaaatcaatcaaaattgggttc 143
              ||||||||||||||||||| ||||
Sbjct: 145734 gaaaaatcaatcaaaattgtgttc 145711

>gb|BC043692.1| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:5150289), partial
           cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 ccggcctggacctcccttca 226
           ||||||||||||||||||||
Sbjct: 949 ccggcctggacctcccttca 968

>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   agaaaaatcaatcaaaattg 138
             ||||||||||||||||||||
Sbjct: 45960 agaaaaatcaatcaaaattg 45941

>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    agaaaaatcaatcaaaattg 138
              ||||||||||||||||||||
Sbjct: 154108 agaaaaatcaatcaaaattg 154127

>ref|XM_232123.3| PREDICTED: Rattus norvegicus dysferlin (predicted) (Dysf_predicted),
            mRNA
          Length = 6810

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  ccggcctggacctcccttca 226
            ||||||||||||||||||||
Sbjct: 5673 ccggcctggacctcccttca 5692

>dbj|AK131144.1| Mus musculus mRNA for mFLJ00175 protein
          Length = 6660

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  ccggcctggacctcccttca 226
            ||||||||||||||||||||
Sbjct: 5574 ccggcctggacctcccttca 5593

>emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 map Xq28, complete sequence
          Length = 228540

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    agaaaaatcaatcaaaattg 138
              ||||||||||||||||||||
Sbjct: 115205 agaaaaatcaatcaaaattg 115224

>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete
              sequence
          Length = 270771

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 120    gaaaaatcaatcaaaattgggttc 143
              ||||||||||||||||||| ||||
Sbjct: 199509 gaaaaatcaatcaaaattgtgttc 199486

>gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, complete sequence
          Length = 139303

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gagaaaaatcaatcaaaatt 137
             ||||||||||||||||||||
Sbjct: 15634 gagaaaaatcaatcaaaatt 15615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,342,456
Number of Sequences: 3902068
Number of extensions: 2342456
Number of successful extensions: 44742
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44694
Number of HSP's gapped (non-prelim): 44
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)