ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSHM_SARGL (O63852) Mitochondrial MutS protein homolog 30 1.7
2CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1) 28 5.0
3CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1) 28 5.0
4CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1) 28 5.0
5P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor ... 28 6.6
6KNRL_DROME (P13054) Knirps-related protein 28 8.6
7FBF1_CAEEL (Q9N5M6) Fem-3 mRNA-binding factor 1 28 8.6

>MSHM_SARGL (O63852) Mitochondrial MutS protein homolog|
          Length = 982

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  TIKNKYFQKEGYNIFFSSKKMT 86
           +IK +YF KEGY    SSKK+T
Sbjct: 530 SIKAEYFNKEGYAFSISSKKLT 551



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>CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1)|
          Length = 505

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 16  KARLKTSIFKRKDTTSSFLQKR*HTAHAYPQHQQ 117
           +A +KT +F   DTTSS +    +    YP+HQQ
Sbjct: 305 QAEVKTFMFAGHDTTSSAISWILYCLAKYPEHQQ 338



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>CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1)|
          Length = 259

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 114 AK*SSAPYSPLHSIPGPASTTSWSLLNNSW 203
           AK  SAPY     +PG       SLLNN W
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRW 68



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>CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1)|
          Length = 258

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 114 AK*SSAPYSPLHSIPGPASTTSWSLLNNSW 203
           AK  SAPY     +PG       SLLNN W
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRW 68



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>P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 391

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 99  IPATPAK*SSAPYSPLHSIPGPASTTSWSL 188
           +PA PA  + AP +P  + P PA  TSW L
Sbjct: 63  VPAAPAPEAPAPAAPALAAPAPA--TSWPL 90



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>KNRL_DROME (P13054) Knirps-related protein|
          Length = 647

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 100 YPQHQQNNLLHLTPPYTPFQDQPRLPAG 183
           +   +++ ++ +TPP++P Q + R PAG
Sbjct: 460 HDDEEEDLVVSMTPPHSPAQQEERTPAG 487



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>FBF1_CAEEL (Q9N5M6) Fem-3 mRNA-binding factor 1|
          Length = 614

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 10  SPKARLKTSIFKRKDTTSSFLQKR*HTAHAYPQHQQNNLLHLTPPYTPFQD 162
           SP A+ +TS++        F     +    Y +HQQN+++   PP TP  D
Sbjct: 33  SPMAQHETSMWNFNSLNPYFSMLNMNDGMNYARHQQNHIVTSRPP-TPLTD 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,356,039
Number of Sequences: 219361
Number of extensions: 597923
Number of successful extensions: 1849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1849
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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