ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC073483.1| Xenopus laevis cDNA clone IMAGE:5570009, partial cds 42 0.66
2gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 42 0.66
3gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, com... 42 0.66
4gb|AC161108.2| Mus musculus chromosome 1, clone RP23-224G12, com... 40 2.6
5gb|AC113039.10| Mus musculus chromosome 1, clone RP23-229P20, co... 40 2.6
6gb|AC132104.3| Mus musculus BAC clone RP24-364N7 from chromosome... 40 2.6
7emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chro... 40 2.6
8ref|NM_001017032.2| Xenopus tropicalis leucine zipper transcript... 40 2.6
9gb|AC093435.3| Drosophila melanogaster 3L BAC RP98-7A5 (Roswell ... 40 2.6
10gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 2.6
11emb|CR762013.2| Xenopus tropicalis finished cDNA, clone TEgg003i20 40 2.6
12gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35... 40 2.6
13gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 2.6
14gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 2.6

>gb|BC073483.1| Xenopus laevis cDNA clone IMAGE:5570009, partial cds
          Length = 5458

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 121  aatcttctgcaccttactccc 141
            |||||||||||||||||||||
Sbjct: 5287 aatcttctgcaccttactccc 5307



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>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     ttaaaaacaagtattttcaaa 45
              |||||||||||||||||||||
Sbjct: 196127 ttaaaaacaagtattttcaaa 196107



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>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence
          Length = 184206

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 25     ttaaaaacaagtattttcaaa 45
              |||||||||||||||||||||
Sbjct: 154018 ttaaaaacaagtattttcaaa 154038



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>gb|AC161108.2| Mus musculus chromosome 1, clone RP23-224G12, complete sequence
          Length = 207067

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     atacaacatcttcttttctt 72
              ||||||||||||||||||||
Sbjct: 124768 atacaacatcttcttttctt 124787



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>gb|AC113039.10| Mus musculus chromosome 1, clone RP23-229P20, complete sequence
          Length = 172732

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    atacaacatcttcttttctt 72
             ||||||||||||||||||||
Sbjct: 73677 atacaacatcttcttttctt 73658



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>gb|AC132104.3| Mus musculus BAC clone RP24-364N7 from chromosome 9, complete sequence
          Length = 161545

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ctcccccctacactccattc 156
              ||||||||||||||||||||
Sbjct: 111178 ctcccccctacactccattc 111159



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>emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chromosome 13 Contains a
              meningioma expressed antigen 6 (coiled-coil proline-rich)
              (MGEA6) pseudogene, a novel gene and the 3' end of the
              TBC1D4 gene for TBC1 domain family, member 4 (KIAA0603),
              complete sequence
          Length = 158310

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     acatcttcttttcttcaaaa 77
              ||||||||||||||||||||
Sbjct: 110454 acatcttcttttcttcaaaa 110435



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>ref|NM_001017032.2| Xenopus tropicalis leucine zipper transcription factor-like 1
           (lztfl1), mRNA
          Length = 1230

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  gaaggcacgattaaaaacaa 34
           ||||||||||||||||||||
Sbjct: 564 gaaggcacgattaaaaacaa 583



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>gb|AC093435.3| Drosophila melanogaster 3L BAC RP98-7A5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 171689

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    caacatcttcttttcttcaa 75
             ||||||||||||||||||||
Sbjct: 91449 caacatcttcttttcttcaa 91468



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    aaaataatcttctgcacctt 135
              ||||||||||||||||||||
Sbjct: 838347 aaaataatcttctgcacctt 838366



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>emb|CR762013.2| Xenopus tropicalis finished cDNA, clone TEgg003i20
          Length = 1230

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  gaaggcacgattaaaaacaa 34
           ||||||||||||||||||||
Sbjct: 564 gaaggcacgattaaaaacaa 583



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>gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35 of 83 of the complete
              sequence
          Length = 304975

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     caacatcttcttttcttcaa 75
              ||||||||||||||||||||
Sbjct: 113698 caacatcttcttttcttcaa 113679



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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     aaaacaagtattttcaaaag 47
              ||||||||||||||||||||
Sbjct: 799768 aaaacaagtattttcaaaag 799749



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     tattttcaaaaggaaggata 55
              ||||||||||||||||||||
Sbjct: 549093 tattttcaaaaggaaggata 549112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,734,503
Number of Sequences: 3902068
Number of extensions: 2734503
Number of successful extensions: 238590
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 238357
Number of HSP's gapped (non-prelim): 233
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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