ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein 30 3.0
2S230_PLAFO (P68875) Transmission-blocking target antigen S230 pr... 29 5.2
3S230_PLAF7 (P68874) Transmission-blocking target antigen S230 pr... 29 5.2
4Y1411_SYNY3 (P72725) UPF0272 protein slr1411 29 5.2
5PDC2_CANAL (O60035) Protein PDC2 28 8.8

>CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein|
          Length = 500

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 260 HSISQVLLFSCWQLNLYTLLYVLVA*EIQV 349
           HSI  +  F    L+L+TLLY+L+  EIQ+
Sbjct: 373 HSIEAITNFFADLLSLFTLLYLLITLEIQI 402



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>S230_PLAFO (P68875) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 372  ISFEQHFGT*ISQATNTYNSVYRFSCQQEN 283
            ++F+ H+ T  ++  +T+NS+  FSC   N
Sbjct: 2329 LNFKNHYSTAYAKVPDTFNSIINFSCNCYN 2358



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>S230_PLAF7 (P68874) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 372  ISFEQHFGT*ISQATNTYNSVYRFSCQQEN 283
            ++F+ H+ T  ++  +T+NS+  FSC   N
Sbjct: 2329 LNFKNHYSTAYAKVPDTFNSIINFSCNCYN 2358



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>Y1411_SYNY3 (P72725) UPF0272 protein slr1411|
          Length = 422

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 105 NMSH--ELIYRAVTSLGTLDKRKNIAAQMKHVYTV----GPIHVRKNYGALVGKK 251
           N +H   L++R  TSLG   +++   A  +   TV    GPI ++  YG   GKK
Sbjct: 323 NQNHCLNLLFRETTSLGVRVRQQQRYALEREWQTVVIPHGPIRIKVAYGYQAGKK 377



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>PDC2_CANAL (O60035) Protein PDC2|
          Length = 836

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 227 LRCVGWKKRTMHSISQVLLFSCW-QLNLYTLL 319
           +R + W  R+ HS+S   +FS W + +L+ LL
Sbjct: 428 IRAIEWITRSWHSVSSERIFSSWKKTHLFNLL 459


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,697,578
Number of Sequences: 219361
Number of extensions: 1268538
Number of successful extensions: 3380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3380
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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