ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20f04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 4e-16 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||||||| ||||| |||||||||||| ||| |||||| Sbjct: 3246013 cattagctaggtc-ttttgttctcctgtcggcaattgaatctgtacatgctattgtatag 3245955 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||||||||||||||||||| Sbjct: 3245954 gttagtgacttgagagattcaagtgcc 3245928
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 4e-16 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| |||||| ||||| |||||||||||| |||||||||| Sbjct: 27859925 cattagctaggtc-ttttgttgtcctgtcggcaattgaatctgtacatgctgttgtatag 27859983 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||||||||||||||||||| Sbjct: 27859984 gttagtgacttgagagattcaagtgcc 27860010
>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144G04 Length = 194459 Score = 93.7 bits (47), Expect = 4e-16 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| |||||| ||||| |||||||||||| |||||||||| Sbjct: 46606 cattagctaggtc-ttttgttgtcctgtcggcaattgaatctgtacatgctgttgtatag 46664 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||||||||||||||||||| Sbjct: 46665 gttagtgacttgagagattcaagtgcc 46691
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 93.7 bits (47), Expect = 4e-16 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||||||| ||||| |||||||||||| ||| |||||| Sbjct: 55706 cattagctaggtc-ttttgttctcctgtcggcaattgaatctgtacatgctattgtatag 55648 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||||||||||||||||||| Sbjct: 55647 gttagtgacttgagagattcaagtgcc 55621
>gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0024E08, complete sequence Length = 131946 Score = 77.8 bits (39), Expect = 3e-11 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| |||||| |||| |||||||||||| |||||||||| Sbjct: 88599 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtatag 88541 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||| ||||||||||||||| Sbjct: 88540 gttagtgacttaagagattcaagtgcc 88514
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 77.8 bits (39), Expect = 3e-11 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| |||||| |||| |||||||||||| |||||||||| Sbjct: 26065032 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtatag 26064974 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||| ||||||||||||||| Sbjct: 26064973 gttagtgacttaagagattcaagtgcc 26064947 Score = 61.9 bits (31), Expect = 2e-06 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||| ||| ||||| |||||||||||| |||||||||| Sbjct: 21570472 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21570530 Query: 325 gttagtggcttgaga 339 |||| || ||||||| Sbjct: 21570531 gttattgacttgaga 21570545
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| || ||| ||||| |||||||||||| |||||||||| Sbjct: 10641450 cattagctaggtc-ttttgttgtcttgtcggcaattgaatctgtacatgctgttgtatag 10641392 Query: 325 gttagtggcttgagagattcaagtgcc 351 |||| || ||||||||||||||||||| Sbjct: 10641391 gttattgacttgagagattcaagtgcc 10641365
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0057I13 Length = 156330 Score = 77.8 bits (39), Expect = 3e-11 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| || ||| ||||| |||||||||||| |||||||||| Sbjct: 93762 cattagctaggtc-ttttgttgtcttgtcggcaattgaatctgtacatgctgttgtatag 93704 Query: 325 gttagtggcttgagagattcaagtgcc 351 |||| || ||||||||||||||||||| Sbjct: 93703 gttattgacttgagagattcaagtgcc 93677
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 77.8 bits (39), Expect = 3e-11 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| ||||||| |||||| |||| |||||||||||| |||||||||| Sbjct: 26383728 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtatag 26383670 Query: 325 gttagtggcttgagagattcaagtgcc 351 ||||||| ||| ||||||||||||||| Sbjct: 26383669 gttagtgacttaagagattcaagtgcc 26383643 Score = 61.9 bits (31), Expect = 2e-06 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||| ||| ||||| |||||||||||| |||||||||| Sbjct: 21880671 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21880729 Query: 325 gttagtggcttgaga 339 |||| || ||||||| Sbjct: 21880730 gttattgacttgaga 21880744
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 61.9 bits (31), Expect = 2e-06 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||| ||| ||||| |||||||||||| |||||||||| Sbjct: 93991 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 94049 Query: 325 gttagtggcttgaga 339 |||| || ||||||| Sbjct: 94050 gttattgacttgaga 94064
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 61.9 bits (31), Expect = 2e-06 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||| ||| ||||| |||||||||||| |||||||||| Sbjct: 21378751 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21378693 Query: 325 gttagtggcttgaga 339 |||| || ||||||| Sbjct: 21378692 gttattgacttgaga 21378678
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 61.9 bits (31), Expect = 2e-06 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 265 cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324 ||||||| ||||| |||||||||| ||| ||||| |||||||||||| |||||||||| Sbjct: 21304970 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21304912 Query: 325 gttagtggcttgaga 339 |||| || ||||||| Sbjct: 21304911 gttattgacttgaga 21304897
>gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, complete sequence Length = 214267 Score = 46.1 bits (23), Expect = 0.091 Identities = 23/23 (100%) Strand = Plus / Plus Query: 329 gtggcttgagagattcaagtgcc 351 ||||||||||||||||||||||| Sbjct: 24025 gtggcttgagagattcaagtgcc 24047
>emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 in linkage group 14, complete sequence Length = 179115 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 103 acaacatgtcacacgagttaat 124 |||||||||||||||||||||| Sbjct: 113006 acaacatgtcacacgagttaat 113027
>gb|AC161363.7| Mus musculus BAC clone RP24-554L15 from chromosome 6, complete sequence Length = 209193 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 aaaagaaagaatattgctgct 179 ||||||||||||||||||||| Sbjct: 68723 aaaagaaagaatattgctgct 68703
>gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complete sequence Length = 161579 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 atacaactccagtgaacaatg 413 ||||||||||||||||||||| Sbjct: 91123 atacaactccagtgaacaatg 91143
>gb|AC138263.8| Mus musculus chromosome 6, clone RP23-291O5, complete sequence Length = 206016 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 aaaagaaagaatattgctgct 179 ||||||||||||||||||||| Sbjct: 4010 aaaagaaagaatattgctgct 3990
>emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on chromosome X Contains a tubulin beta polypeptide pseudogene, complete sequence Length = 197611 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 atttacagagctgttacatca 143 ||||||||||||||||||||| Sbjct: 80852 atttacagagctgttacatca 80832
>gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, complete sequence Length = 167820 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 agagctgttacatcacttggc 149 ||||||||||||||||||||| Sbjct: 62982 agagctgttacatcacttggc 63002
>gb|AC022390.9| Homo sapiens chromosome 10 clone RP11-131N11, complete sequence Length = 161223 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 tggcttgagagattcaagtgc 350 ||||||||||||||||||||| Sbjct: 12759 tggcttgagagattcaagtgc 12739
>gb|AC092376.3| Homo sapiens chromosome 16 clone RP11-679B19, complete sequence Length = 168083 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 ccaacacagtggggagtggct 77 ||||||||||||||||||||| Sbjct: 46856 ccaacacagtggggagtggct 46876
>dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9 Length = 51860 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 caaaatatgttgcatttttcgtaat 28 ||||||||||||| ||||||||||| Sbjct: 31387 caaaatatgttgcgtttttcgtaat 31411
>gb|AE003675.4| Drosophila melanogaster chromosome 3R, section 9 of 118 of the complete sequence Length = 145958 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 atacaactccagtgaacaatg 413 ||||||||||||||||||||| Sbjct: 129592 atacaactccagtgaacaatg 129612
>gb|AF087677.1|AF087677 Neisseria flavescens penicillin-binding protein 1 (ponA) gene, complete cds Length = 3247 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 ttggcaactgaatctgtacac 312 ||||||||||||||||||||| Sbjct: 1269 ttggcaactgaatctgtacac 1249
>gb|AC163210.4| Mus musculus chromosome 7, clone RP24-362L9, complete sequence Length = 161672 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 aagtgccaaaatgttgttca 364 |||||||||||||||||||| Sbjct: 73439 aagtgccaaaatgttgttca 73420
>gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, complete sequence Length = 245404 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 atccaacacagtggggagtg 74 |||||||||||||||||||| Sbjct: 191667 atccaacacagtggggagtg 191686
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ttgacaaaagaaagaatatt 173 |||||||||||||||||||| Sbjct: 1215220 ttgacaaaagaaagaatatt 1215239
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 acagctctacaacatgtcac 114 |||||||||||||||||||| Sbjct: 16277011 acagctctacaacatgtcac 16276992
>emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chromosome 1 Contains a novel gene, complete sequence Length = 142067 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 agtggcttgagagattcaagtgcc 351 |||| ||||||||||||||||||| Sbjct: 118446 agtgacttgagagattcaagtgcc 118423
>emb|AL445186.4| Human DNA sequence from clone RP11-336P12 on chromosome 9 Contains the 3' end of the PBX3 gene for pre-B-cell leukemia transcription factor 3, complete sequence Length = 156124 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ttcaagtgccaaaatgttgt 361 |||||||||||||||||||| Sbjct: 27420 ttcaagtgccaaaatgttgt 27439
>emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 on chromosome 6p24.1-25.3 Contains the 3' end of a putative novel gene, complete sequence Length = 126281 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 agagatataggcaaaatcca 386 |||||||||||||||||||| Sbjct: 74878 agagatataggcaaaatcca 74859
>emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complete genome, segment 7 Length = 128050 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ttgacaaaagaaagaatatt 173 |||||||||||||||||||| Sbjct: 83113 ttgacaaaagaaagaatatt 83132
>gb|AY083632.1| Lecanopteris crustacea trnL-trnF intergenic spacer, chloroplast sequence Length = 211 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccaattcatgtacggaaaaa 226 |||||||||||||||||||| Sbjct: 189 ccaattcatgtacggaaaaa 170
>gb|AY083629.1| Lecanopteris lomarioides trnL-trnF intergenic spacer, chloroplast sequence Length = 172 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccaattcatgtacggaaaaa 226 |||||||||||||||||||| Sbjct: 172 ccaattcatgtacggaaaaa 153
>emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE Length = 133910 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tgtatgtgttagtggcttga 337 |||||||||||||||||||| Sbjct: 72061 tgtatgtgttagtggcttga 72042 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tgtatgtgttagtggcttga 337 |||||||||||||||||||| Sbjct: 71985 tgtatgtgttagtggcttga 71966
>emb|AL672013.9| Mouse DNA sequence from clone RP23-32G8 on chromosome 11 Contains the 3' end of the Ebf1 gene for early B-cell factor 1 and a novel gene, complete sequence Length = 207905 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gtgttagtggcttgagagat 342 |||||||||||||||||||| Sbjct: 69029 gtgttagtggcttgagagat 69048
>emb|AL928931.15| Mouse DNA sequence from clone RP23-419H3 on chromosome 2, complete sequence Length = 148740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 aatattgctgctcaaatgaa 187 |||||||||||||||||||| Sbjct: 81776 aatattgctgctcaaatgaa 81795
>gb|DQ164508.1| Microsorum punctatum trnL-trnF intergenic spacer, partial sequence; chloroplast Length = 345 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccaattcatgtacggaaaaa 226 |||||||||||||||||||| Sbjct: 280 ccaattcatgtacggaaaaa 261
>dbj|AK149044.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120478L10 product:hypothetical protein, full insert sequence Length = 2474 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 atccaacacagtggggagtg 74 |||||||||||||||||||| Sbjct: 73 atccaacacagtggggagtg 54
>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence Length = 177270 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 agtggcttgagagattcaagtgcc 351 |||||||||||||| ||||||||| Sbjct: 24604 agtggcttgagagagtcaagtgcc 24627
>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10, complete sequence Length = 132400 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ttctcctgttggcaactgaatctg 307 |||||| ||||||||||||||||| Sbjct: 123590 ttctcccgttggcaactgaatctg 123613
>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete sequence Length = 135585 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 acagctctacaacatgtcac 114 |||||||||||||||||||| Sbjct: 75027 acagctctacaacatgtcac 75008
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 acagctctacaacatgtcac 114 |||||||||||||||||||| Sbjct: 16270644 acagctctacaacatgtcac 16270625
>emb|AJ278907.1|BTA278907 Bos taurus partial ed1 gene for ectodysplasin A, exons 4-9 Length = 37331 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ataggcaaaatccagacact 392 |||||||||||||||||||| Sbjct: 30196 ataggcaaaatccagacact 30177
>dbj|AB028896.2| Streptococcus agalactiae type-specific capsular polysaccharide biosynthesis gene region (cpsIaS to bcat gene), complete and partial cds Length = 25021 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ttgacaaaagaaagaatatt 173 |||||||||||||||||||| Sbjct: 20226 ttgacaaaagaaagaatatt 20207
>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20, complete sequence Length = 98841 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ttctcctgttggcaactgaatctg 307 |||||| ||||||||||||||||| Sbjct: 43670 ttctcccgttggcaactgaatctg 43647 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,183,417 Number of Sequences: 3902068 Number of extensions: 4183417 Number of successful extensions: 77987 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77678 Number of HSP's gapped (non-prelim): 309 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
