ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20f01 |
|---|---|
| Clone Library Name | barley_pub |
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 202 IRTPPSRRLAPAEASCTHQQALGHWQALQA 291 ++ PPS L +C Q +GHWQ L + Sbjct: 403 LKEPPSHCLVHLHKNCIPQYTIGHWQKLDS 432
>BEX2_RAT (Q3MKQ1) Protein BEX2 (Brain-expressed X-linked protein 2 homolog)| Length = 129 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ +FG + RQL K+RE+QL + ST PP HH Sbjct: 85 NVQRFGEDMRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 122
>BMP5_HUMAN (P22003) Bone morphogenetic protein 5 precursor (BMP-5)| Length = 454 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = +3 Query: 87 SRVRYIFSPHFQPRRLKCT-TTRLT--DPAQAVLHDSFLASDSDSTLS 221 +R Y SP+ PRR++ + TT LT P A LHD+ +D+D +S Sbjct: 112 ARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASLHDTNFLNDADMVMS 159
>BEX1_RAT (Q3MKQ2) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)| (EG2RVC) Length = 128 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ +FG + RQL K+RE+QL + ST PP HH Sbjct: 84 NVQRFGEDMRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 121
>BEX2_MOUSE (Q9WTZ8) Protein BEX2 (Brain-expressed X-linked protein 2 homolog)| Length = 129 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ +FG + RQL K+RE+QL + ST PP HH Sbjct: 85 NVQRFGDDVRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 122
>HSP78_CANAL (Q96UX5) Heat shock protein 78, mitochondrial precursor| Length = 812 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = +3 Query: 54 QKSGRNNYIQKSRVRYIFSPHFQPRRLKCTTTRLTDPAQAVLHDSFLASDSDSTLS 221 Q + +Y + SR++Y P Q + + + L + +LHDS + D +S Sbjct: 415 QATREGDYARASRIQYASIPELQDKIQELSKNELAAKSSNLLHDSVTSEDIAGVIS 470
>BEX1_MOUSE (Q9R224) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)| (Reduced expression protein 3) (REX-3) Length = 128 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ +FG + RQL K+RE+QL + ST PP HH Sbjct: 84 NVQRFGGDVRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 121
>EFG_GLOVI (Q7NEF2) Elongation factor G (EF-G)| Length = 707 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -3 Query: 361 EDIFGAVLETA---AQAYGNDESIEVMLEELAND-PELADEYMKLLLAQVGE 218 ED +++ A YGND ++ +EE+ D EL EY L+ V E Sbjct: 184 EDTLSGIVDLVGMKAYVYGNDIGTDIRVEEIPADMEELVQEYRAKLIEAVSE 235
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +1 Query: 214 PSRRLAPAEASCTHQQALGHWQALQA*PRCSRRCHKPEQQSQGRHQRYPQGHH 372 P RR + C Q+ Q Q RC +R + +QQSQ + Q Q H Sbjct: 83 PQRRYEECQQECRQQEERQRPQCQQ---RCLKRFEQEQQQSQRQFQECQQHCH 132
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 202 IRTPPSRRLAPAEASCTHQQALGHWQALQA 291 ++ PS L +C Q LGHWQ L++ Sbjct: 403 LKEMPSHCLVHLHKNCIPQYTLGHWQKLES 432
>BEX1_HUMAN (Q9HBH7) Protein BEX1 (Brain-expressed X-linked protein 1)| Length = 125 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ + G RQL K+REKQL + ST PP HH Sbjct: 81 NMERIGEEVRQLMEKLREKQLS-------HSLRAVSTDPPHHDHH 118
>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema| III/F) Length = 785 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = +1 Query: 208 TPP----SRRLAPAEASCTHQQALGHWQALQA*PR---CSRRCHKPEQQSQGRHQRY 357 TPP ++ LA E HQ G+W+ + PR + R +P+ Q + R++R+ Sbjct: 724 TPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRH 780
>BEX2_HUMAN (Q9BXY8) Protein BEX2 (Brain-expressed X-linked protein 2) (hBex2)| Length = 128 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ + G RQL K+REKQL + ST PP HH Sbjct: 84 NMERIGEEVRQLMEKLREKQLS-------HSLRAVSTDPPHHDHH 121
>BEX1_MACFA (Q2PG52) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)| Length = 128 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +2 Query: 14 SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 148 ++ + G RQL K+REKQL + ST PP HH Sbjct: 84 NMERIGEEVRQLMEKLREKQLS-------HSLRAVSTDPPHHDHH 121
>PI4KB_RAT (O08561) Phosphatidylinositol 4-kinase beta (EC 2.7.1.67) (PtdIns| 4-kinase beta) (PI4Kbeta) (PI4K-beta) Length = 816 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 66 SLTFGCSCLLLLPNFASDMHIA 1 S+ F C LLL ++SDMHI+ Sbjct: 205 SINFSLQCALLLGAYSSDMHIS 226
>PI4KB_HUMAN (Q9UBF8) Phosphatidylinositol 4-kinase beta (EC 2.7.1.67) (PtdIns| 4-kinase beta) (PI4Kbeta) (PI4K-beta) (NPIK) (PI4K92) Length = 816 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 66 SLTFGCSCLLLLPNFASDMHIA 1 S+ F C LLL ++SDMHI+ Sbjct: 205 SINFSLQCALLLGAYSSDMHIS 226
>PI4KB_BOVIN (O02810) Phosphatidylinositol 4-kinase beta (EC 2.7.1.67) (PtdIns| 4-kinase beta) (PI4Kbeta) (PI4K-beta) Length = 816 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 66 SLTFGCSCLLLLPNFASDMHIA 1 S+ F C LLL ++SDMHI+ Sbjct: 205 SINFSLQCALLLGAYSSDMHIS 226
>PI4KB_MOUSE (Q8BKC8) Phosphatidylinositol 4-kinase beta (EC 2.7.1.67) (PtdIns| 4-kinase beta) (PI4Kbeta) (PI4K-beta) Length = 801 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 66 SLTFGCSCLLLLPNFASDMHIA 1 S+ F C LLL ++SDMHI+ Sbjct: 205 SINFSLQCALLLGAYSSDMHIS 226
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 214 PSRRLAPAEASCTHQQALGHWQALQA 291 PS L +C Q LGHWQ L++ Sbjct: 407 PSHCLVHLHKNCIPQYTLGHWQKLES 432
>GAL1_TREPA (O83433) Putative galactokinase (EC 2.7.1.6) (Galactose kinase)| Length = 397 Score = 27.3 bits (59), Expect = 8.9 Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 6/98 (6%) Frame = -3 Query: 397 EACQRIEQHDAPEDI------FGAVLETAAQAYGNDESIEVMLEELANDPELADEYMKLL 236 E+C E D PE I F + E A GN S+ + D +L Sbjct: 18 ESCHTEEYGDEPEAIAVVPGRFHLLGEYLWFAQGNTLSMAIDQTLTLCVSRRKDSTFRLF 77 Query: 235 LAQVGERVXXXXXXXXXX*RTAWAGSVKRVVVHFRRRG 122 +GER WA SVK V++ F G Sbjct: 78 SLTLGERRKISTANLRYRKEDRWANSVKAVILSFMDGG 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,593,960 Number of Sequences: 219361 Number of extensions: 747835 Number of successful extensions: 2120 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2116 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
