ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR751602.12| Zebrafish DNA sequence from clone DKEYP-10A3 in... 42 0.29
2gb|AC150393.2| Branchiostoma floridae clone CH302-13E12, complet... 40 1.1
3gb|AC124624.13| Mus musculus chromosome 5, clone RP23-417K9, com... 40 1.1
4gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's H... 40 1.1
5gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 1.1
6gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, co... 38 4.5
7ref|XM_001005537.1| PREDICTED: Mus musculus RIKEN cDNA 2010315B0... 38 4.5
8ref|XM_904559.2| PREDICTED: Mus musculus RIKEN cDNA 2010315B03 g... 38 4.5
9gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, co... 38 4.5
10gb|AC124007.5| Homo sapiens BAC clone RP11-526C12 from 4, comple... 38 4.5
11ref|XM_670997.1| Plasmodium berghei strain ANKA hypothetical pro... 38 4.5
12gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, com... 38 4.5
13gb|BC029716.1| Mus musculus RIKEN cDNA 2010315B03 gene, mRNA (cD... 38 4.5
14gb|AC149872.2| Xenopus tropicalis clone CH216-115D10, complete s... 38 4.5
15emb|CR385052.5| Zebrafish DNA sequence from clone CH211-166F3 in... 38 4.5
16gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21,... 38 4.5
17gb|AC091910.3| Homo sapiens chromosome 5 clone RP11-210I16, comp... 38 4.5
18gb|DQ282283.1| Uncultured bacterium clone MS8-Int-F02 unnamed in... 38 4.5
19gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, c... 38 4.5
20gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, compl... 38 4.5
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
22gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, comple... 38 4.5
23gb|AC062032.5| Homo sapiens BAC clone RP11-515K12 from 2, comple... 38 4.5
24gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, comp... 38 4.5
25gb|AC138804.2| Homo sapiens chromosome 5 clone RP11-1001A11, com... 38 4.5
26gb|AC068193.7| Homo sapiens BAC clone RP11-103P16 from 2, comple... 38 4.5
27gb|AC092838.4| Homo sapiens BAC clone RP11-183F15 from 2, comple... 38 4.5
28dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
29dbj|AP004254.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
30emb|AL672245.6| Mouse DNA sequence from clone RP23-43K8 on chrom... 38 4.5
31gb|J03971.1|BRPANTP B.malayi 63 kd antigen (potentially protecti... 38 4.5

>emb|CR751602.12| Zebrafish DNA sequence from clone DKEYP-10A3 in linkage group 5,
             complete sequence
          Length = 65729

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 14    aaataaagatacaataccatgcaat 38
             ||||||||||||||||| |||||||
Sbjct: 34685 aaataaagatacaatacaatgcaat 34709



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>gb|AC150393.2| Branchiostoma floridae clone CH302-13E12, complete sequence
          Length = 207808

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     taaaaaataaagatacaata 29
              ||||||||||||||||||||
Sbjct: 108245 taaaaaataaagatacaata 108226



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>gb|AC124624.13| Mus musculus chromosome 5, clone RP23-417K9, complete sequence
          Length = 192261

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aaaaaataaagatacaatac 30
             ||||||||||||||||||||
Sbjct: 42823 aaaaaataaagatacaatac 42804



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>gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216155

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    taaaaaataaagatacaata 29
             ||||||||||||||||||||
Sbjct: 23576 taaaaaataaagatacaata 23595



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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     aaaaaataaagatacaatac 30
              ||||||||||||||||||||
Sbjct: 135028 aaaaaataaagatacaatac 135009



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>gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, complete sequence
          Length = 168053

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    atacaataccatgcaatgt 40
             |||||||||||||||||||
Sbjct: 70014 atacaataccatgcaatgt 69996



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>ref|XM_001005537.1| PREDICTED: Mus musculus RIKEN cDNA 2010315B03 gene (2010315B03Rik),
           mRNA
          Length = 1637

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  aggcataaaagaacacaca 83
           |||||||||||||||||||
Sbjct: 584 aggcataaaagaacacaca 602



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>ref|XM_904559.2| PREDICTED: Mus musculus RIKEN cDNA 2010315B03 gene, transcript
           variant 1 (2010315B03Rik), mRNA
          Length = 1764

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  aggcataaaagaacacaca 83
           |||||||||||||||||||
Sbjct: 546 aggcataaaagaacacaca 564



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>gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, complete sequence
          Length = 207221

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      gtaaaaaataaagatacaa 27
              |||||||||||||||||||
Sbjct: 139665 gtaaaaaataaagatacaa 139683



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>gb|AC124007.5| Homo sapiens BAC clone RP11-526C12 from 4, complete sequence
          Length = 26449

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   taaaaaataaagatacaat 28
            |||||||||||||||||||
Sbjct: 1452 taaaaaataaagatacaat 1470



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>ref|XM_670997.1| Plasmodium berghei strain ANKA hypothetical protein (PB000594.00.0)
           partial mRNA
          Length = 378

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 11  aaaaaataaagatacaata 29
           |||||||||||||||||||
Sbjct: 198 aaaaaataaagatacaata 216



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>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence
          Length = 182640

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aaagatacaataccatgca 36
             |||||||||||||||||||
Sbjct: 57161 aaagatacaataccatgca 57179



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>gb|BC029716.1| Mus musculus RIKEN cDNA 2010315B03 gene, mRNA (cDNA clone
           IMAGE:5250703), containing frame-shift errors
          Length = 1371

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  aggcataaaagaacacaca 83
           |||||||||||||||||||
Sbjct: 503 aggcataaaagaacacaca 521



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>gb|AC149872.2| Xenopus tropicalis clone CH216-115D10, complete sequence
          Length = 194934

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     taaaaaataaagatacaat 28
              |||||||||||||||||||
Sbjct: 117855 taaaaaataaagatacaat 117873



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>emb|CR385052.5| Zebrafish DNA sequence from clone CH211-166F3 in linkage group 1,
              complete sequence
          Length = 163401

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     aaaaaataaagatacaata 29
              |||||||||||||||||||
Sbjct: 153449 aaaaaataaagatacaata 153431



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>gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21, complete sequence
          Length = 176413

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    taaaaaataaagatacaat 28
             |||||||||||||||||||
Sbjct: 83307 taaaaaataaagatacaat 83289



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>gb|AC091910.3| Homo sapiens chromosome 5 clone RP11-210I16, complete sequence
          Length = 169490

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    aaagatacaataccatgca 36
             |||||||||||||||||||
Sbjct: 80566 aaagatacaataccatgca 80548



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>gb|DQ282283.1| Uncultured bacterium clone MS8-Int-F02 unnamed integron integrase
           gene, partial cds
          Length = 489

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 56  aagggcatcaggcataaaa 74
           |||||||||||||||||||
Sbjct: 189 aagggcatcaggcataaaa 171



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>gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, complete sequence
          Length = 214166

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     ggcataaaagaacacacat 84
              |||||||||||||||||||
Sbjct: 101034 ggcataaaagaacacacat 101052



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>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    taaaaaataaagatacaat 28
             |||||||||||||||||||
Sbjct: 49809 taaaaaataaagatacaat 49827



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 38      tgtatgtactgaacataaa 56
               |||||||||||||||||||
Sbjct: 1334256 tgtatgtactgaacataaa 1334274



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>gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, complete sequence
          Length = 175490

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     taaaaaataaagatacaat 28
              |||||||||||||||||||
Sbjct: 174942 taaaaaataaagatacaat 174960



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>gb|AC062032.5| Homo sapiens BAC clone RP11-515K12 from 2, complete sequence
          Length = 182147

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    caatgtatgtactgaacat 53
             |||||||||||||||||||
Sbjct: 17597 caatgtatgtactgaacat 17615



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>gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, complete sequence
          Length = 191108

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     aaagatacaataccatgca 36
              |||||||||||||||||||
Sbjct: 188574 aaagatacaataccatgca 188556



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>gb|AC138804.2| Homo sapiens chromosome 5 clone RP11-1001A11, complete sequence
          Length = 183297

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     aaagatacaataccatgca 36
              |||||||||||||||||||
Sbjct: 136634 aaagatacaataccatgca 136616



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>gb|AC068193.7| Homo sapiens BAC clone RP11-103P16 from 2, complete sequence
          Length = 170059

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aaaaaataaagatacaata 29
             |||||||||||||||||||
Sbjct: 34995 aaaaaataaagatacaata 35013



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>gb|AC092838.4| Homo sapiens BAC clone RP11-183F15 from 2, complete sequence
          Length = 112424

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    agggcatcaggcataaaag 75
             |||||||||||||||||||
Sbjct: 67557 agggcatcaggcataaaag 67539



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>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0073J19
          Length = 165174

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     tgtatgtactgaacataaa 56
              |||||||||||||||||||
Sbjct: 163563 tgtatgtactgaacataaa 163581



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>dbj|AP004254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1126_D10
          Length = 90631

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tgtatgtactgaacataaa 56
             |||||||||||||||||||
Sbjct: 26613 tgtatgtactgaacataaa 26631



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>emb|AL672245.6| Mouse DNA sequence from clone RP23-43K8 on chromosome X, complete
              sequence
          Length = 235666

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     aaaaataaagatacaatac 30
              |||||||||||||||||||
Sbjct: 193819 aaaaataaagatacaatac 193801



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>gb|J03971.1|BRPANTP B.malayi 63 kd antigen (potentially protective) gene, complete cds
          Length = 5260

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 11   aaaaaataaagatacaataccat 33
            |||||||||| ||||||||||||
Sbjct: 1789 aaaaaataaaaatacaataccat 1767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,636,474
Number of Sequences: 3902068
Number of extensions: 1636474
Number of successful extensions: 137879
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137737
Number of HSP's gapped (non-prelim): 142
length of query: 102
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 81
effective length of database: 17,151,101,840
effective search space: 1389239249040
effective search space used: 1389239249040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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