Clone Name | rbastl20e12 |
---|---|
Clone Library Name | barley_pub |
>emb|CR751602.12| Zebrafish DNA sequence from clone DKEYP-10A3 in linkage group 5, complete sequence Length = 65729 Score = 42.1 bits (21), Expect = 0.29 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 aaataaagatacaataccatgcaat 38 ||||||||||||||||| ||||||| Sbjct: 34685 aaataaagatacaatacaatgcaat 34709
>gb|AC150393.2| Branchiostoma floridae clone CH302-13E12, complete sequence Length = 207808 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taaaaaataaagatacaata 29 |||||||||||||||||||| Sbjct: 108245 taaaaaataaagatacaata 108226
>gb|AC124624.13| Mus musculus chromosome 5, clone RP23-417K9, complete sequence Length = 192261 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aaaaaataaagatacaatac 30 |||||||||||||||||||| Sbjct: 42823 aaaaaataaagatacaatac 42804
>gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland Research Institute) complete sequence Length = 216155 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 taaaaaataaagatacaata 29 |||||||||||||||||||| Sbjct: 23576 taaaaaataaagatacaata 23595
>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete sequence Length = 211677 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aaaaaataaagatacaatac 30 |||||||||||||||||||| Sbjct: 135028 aaaaaataaagatacaatac 135009
>gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, complete sequence Length = 168053 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 atacaataccatgcaatgt 40 ||||||||||||||||||| Sbjct: 70014 atacaataccatgcaatgt 69996
>ref|XM_001005537.1| PREDICTED: Mus musculus RIKEN cDNA 2010315B03 gene (2010315B03Rik), mRNA Length = 1637 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aggcataaaagaacacaca 83 ||||||||||||||||||| Sbjct: 584 aggcataaaagaacacaca 602
>ref|XM_904559.2| PREDICTED: Mus musculus RIKEN cDNA 2010315B03 gene, transcript variant 1 (2010315B03Rik), mRNA Length = 1764 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aggcataaaagaacacaca 83 ||||||||||||||||||| Sbjct: 546 aggcataaaagaacacaca 564
>gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, complete sequence Length = 207221 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 gtaaaaaataaagatacaa 27 ||||||||||||||||||| Sbjct: 139665 gtaaaaaataaagatacaa 139683
>gb|AC124007.5| Homo sapiens BAC clone RP11-526C12 from 4, complete sequence Length = 26449 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 taaaaaataaagatacaat 28 ||||||||||||||||||| Sbjct: 1452 taaaaaataaagatacaat 1470
>ref|XM_670997.1| Plasmodium berghei strain ANKA hypothetical protein (PB000594.00.0) partial mRNA Length = 378 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aaaaaataaagatacaata 29 ||||||||||||||||||| Sbjct: 198 aaaaaataaagatacaata 216
>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence Length = 182640 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 aaagatacaataccatgca 36 ||||||||||||||||||| Sbjct: 57161 aaagatacaataccatgca 57179
>gb|BC029716.1| Mus musculus RIKEN cDNA 2010315B03 gene, mRNA (cDNA clone IMAGE:5250703), containing frame-shift errors Length = 1371 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aggcataaaagaacacaca 83 ||||||||||||||||||| Sbjct: 503 aggcataaaagaacacaca 521
>gb|AC149872.2| Xenopus tropicalis clone CH216-115D10, complete sequence Length = 194934 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 taaaaaataaagatacaat 28 ||||||||||||||||||| Sbjct: 117855 taaaaaataaagatacaat 117873
>emb|CR385052.5| Zebrafish DNA sequence from clone CH211-166F3 in linkage group 1, complete sequence Length = 163401 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aaaaaataaagatacaata 29 ||||||||||||||||||| Sbjct: 153449 aaaaaataaagatacaata 153431
>gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21, complete sequence Length = 176413 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 taaaaaataaagatacaat 28 ||||||||||||||||||| Sbjct: 83307 taaaaaataaagatacaat 83289
>gb|AC091910.3| Homo sapiens chromosome 5 clone RP11-210I16, complete sequence Length = 169490 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 aaagatacaataccatgca 36 ||||||||||||||||||| Sbjct: 80566 aaagatacaataccatgca 80548
>gb|DQ282283.1| Uncultured bacterium clone MS8-Int-F02 unnamed integron integrase gene, partial cds Length = 489 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 aagggcatcaggcataaaa 74 ||||||||||||||||||| Sbjct: 189 aagggcatcaggcataaaa 171
>gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, complete sequence Length = 214166 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ggcataaaagaacacacat 84 ||||||||||||||||||| Sbjct: 101034 ggcataaaagaacacacat 101052
>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence Length = 67124 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 taaaaaataaagatacaat 28 ||||||||||||||||||| Sbjct: 49809 taaaaaataaagatacaat 49827
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 tgtatgtactgaacataaa 56 ||||||||||||||||||| Sbjct: 1334256 tgtatgtactgaacataaa 1334274
>gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, complete sequence Length = 175490 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 taaaaaataaagatacaat 28 ||||||||||||||||||| Sbjct: 174942 taaaaaataaagatacaat 174960
>gb|AC062032.5| Homo sapiens BAC clone RP11-515K12 from 2, complete sequence Length = 182147 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 caatgtatgtactgaacat 53 ||||||||||||||||||| Sbjct: 17597 caatgtatgtactgaacat 17615
>gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, complete sequence Length = 191108 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 aaagatacaataccatgca 36 ||||||||||||||||||| Sbjct: 188574 aaagatacaataccatgca 188556
>gb|AC138804.2| Homo sapiens chromosome 5 clone RP11-1001A11, complete sequence Length = 183297 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 aaagatacaataccatgca 36 ||||||||||||||||||| Sbjct: 136634 aaagatacaataccatgca 136616
>gb|AC068193.7| Homo sapiens BAC clone RP11-103P16 from 2, complete sequence Length = 170059 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aaaaaataaagatacaata 29 ||||||||||||||||||| Sbjct: 34995 aaaaaataaagatacaata 35013
>gb|AC092838.4| Homo sapiens BAC clone RP11-183F15 from 2, complete sequence Length = 112424 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 agggcatcaggcataaaag 75 ||||||||||||||||||| Sbjct: 67557 agggcatcaggcataaaag 67539
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 tgtatgtactgaacataaa 56 ||||||||||||||||||| Sbjct: 163563 tgtatgtactgaacataaa 163581
>dbj|AP004254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1126_D10 Length = 90631 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 tgtatgtactgaacataaa 56 ||||||||||||||||||| Sbjct: 26613 tgtatgtactgaacataaa 26631
>emb|AL672245.6| Mouse DNA sequence from clone RP23-43K8 on chromosome X, complete sequence Length = 235666 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 aaaaataaagatacaatac 30 ||||||||||||||||||| Sbjct: 193819 aaaaataaagatacaatac 193801
>gb|J03971.1|BRPANTP B.malayi 63 kd antigen (potentially protective) gene, complete cds Length = 5260 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 aaaaaataaagatacaataccat 33 |||||||||| |||||||||||| Sbjct: 1789 aaaaaataaaaatacaataccat 1767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,636,474 Number of Sequences: 3902068 Number of extensions: 1636474 Number of successful extensions: 137879 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137737 Number of HSP's gapped (non-prelim): 142 length of query: 102 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 81 effective length of database: 17,151,101,840 effective search space: 1389239249040 effective search space used: 1389239249040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)