ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FCR1_CANAL (O93870) Fluconazole resistance protein 1 32 0.45
2HSCC_ECOLI (P77319) Chaperone protein hscC (Hsc62) 32 0.58
3TOP1_AERPE (Q9YB01) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi... 30 1.3
4GSPJ_VIBCH (P45776) General secretion pathway protein J precurso... 29 2.9
5RAB26_RAT (P51156) Ras-related protein Rab-26 29 3.8
6ZDH19_HUMAN (Q8WVZ1) Probable palmitoyltransferase ZDHHC19 (EC 2... 28 8.4
7ZDH19_MOUSE (Q810M5) Probable palmitoyltransferase ZDHHC19 (EC 2... 28 8.4

>FCR1_CANAL (O93870) Fluconazole resistance protein 1|
          Length = 517

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 4   DRQRNIALNSLMKDEHHGQAFIRGGWHEPASSTAQDLTNGP-------RHQIAHPTTDRP 162
           D  RN+  +S +  EH G+AFI      P +S  Q  T+ P       + ++  P++D  
Sbjct: 175 DPNRNLKSSSRLFAEHKGEAFI----GSPVTSPQQMPTSNPFRRTSMFKEELESPSSDHY 230

Query: 163 NENYGRQIIAQP 198
           NE+   Q + +P
Sbjct: 231 NESIFSQSVDEP 242



to top

>HSCC_ECOLI (P77319) Chaperone protein hscC (Hsc62)|
          Length = 556

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 189 YDLSTVVFIWSVCRGVCDLMSRPIREVLGSAACWFMPAASNKRLPVVFIFHQRVQCNVSL 10
           YD ST+V + +  +  C L S  I EV+ +  C +       R  V  IF   ++ N ++
Sbjct: 328 YDPSTIVALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTV 387

Query: 9   SVS 1
            VS
Sbjct: 388 PVS 390



to top

>TOP1_AERPE (Q9YB01) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 673

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 56  GRRLFEAAGMNQQAALPKTSRMGRDIKSHTPRQTDQMKTTVDK 184
           GRR+  +AG  Q   L +  R  R+I  H P+ +  +K T +K
Sbjct: 183 GRRVILSAGRVQSPTLVEAYRRWREINLHVPKASVAVKITAEK 225



to top

>GSPJ_VIBCH (P45776) General secretion pathway protein J precursor (Cholera|
           toxin secretion protein epsJ)
          Length = 221

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  SLMKDEHHGQAFIRGGWHEP 90
           SL+  + HG  F+R GWH P
Sbjct: 95  SLLDSDQHGLLFVRLGWHNP 114



to top

>RAB26_RAT (P51156) Ras-related protein Rab-26|
          Length = 257

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 76  GWHEPASSTAQDLTNGPRHQIAHPTTDRP 162
           G   PA+ST     NGPR  +AHP T RP
Sbjct: 11  GGSVPAASTLPAAANGPR--LAHPRTARP 37



to top

>ZDH19_HUMAN (Q8WVZ1) Probable palmitoyltransferase ZDHHC19 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 19) (DHHC-19)
          Length = 282

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 80  QPPRINACPWCSSFIREFN 24
           +PPR   CPWC+  + +F+
Sbjct: 121 RPPRTYHCPWCNICVEDFD 139



to top

>ZDH19_MOUSE (Q810M5) Probable palmitoyltransferase ZDHHC19 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 19) (DHHC-19)
          Length = 347

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 80  QPPRINACPWCSSFIREFN 24
           +PPR   CPWC+  + +F+
Sbjct: 121 RPPRTYHCPWCNICVEDFD 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,862,363
Number of Sequences: 219361
Number of extensions: 606165
Number of successful extensions: 1572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top