ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20e11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66728.1|HVSUCSYN H.vulgare mRNA for sucrose synthase (partial) Length = 2012 Score = 396 bits (200), Expect = e-107 Identities = 215/220 (97%) Strand = Plus / Minus Query: 2 gagacagacaacgaaacattgcattgaactctctgatgaaagatgaacaccacgggcagg 61 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 gagacacacaacgaaacattgcattgaactctctgatgaaagatgaacaccacgggcagg 1952 Query: 62 cgtttattcgaggcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1951 cgtttattcgaggcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatg 1892 Query: 122 ggccgagacatcaaatcgcacaccccacgacagacagaccaaatgaaaactacggtagac 181 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1891 tgccgagacatcaaatcgcacaccccacgacagacggaccaaatggaaactacggtagac 1832 Query: 182 aaatcatagcgcagccgacacttcaccctcccgctcgatg 221 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 1831 aaatcatagcgcagccgacacttcaccctcctgctcgatg 1792
>emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase Length = 2667 Score = 385 bits (194), Expect = e-104 Identities = 203/206 (98%) Strand = Plus / Minus Query: 16 aacattgcattgaactctctgatgaaagatgaacaccacgggcaggcgtttattcgaggc 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2660 aacattgcattgaactctctgatgaaagatgaacaccacgggcaggcgtttattcgaggc 2601 Query: 76 ggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatcaa 135 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2600 ggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgtgccgagacatcaa 2541 Query: 136 atcgcacaccccacgacagacagaccaaatgaaaactacggtagacaaatcatagcgcag 195 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2540 atcgcacaccccacgacagacagaccaaatggaaactacggtagacaaatcatagcgcag 2481 Query: 196 ccgacacttcaccctcccgctcgatg 221 ||||||||||||||||| |||||||| Sbjct: 2480 ccgacacttcaccctcctgctcgatg 2455
>dbj|AB232656.1| Lolium perenne LpSUS mRNA for sucrose synthase, complete cds Length = 2658 Score = 335 bits (169), Expect = 3e-89 Identities = 193/201 (96%) Strand = Plus / Minus Query: 21 tgcattgaactctctgatgaaagatgaacaccacgggcaggcgtttattcgaggcggctg 80 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2655 tgcattgaactccctgatgaaagatgaacaccacgggcaggcgtttattcgaggcggctg 2596 Query: 81 gcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatcaaatcgc 140 |||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 2595 gcatgaaccagcaaccagcactgcccaagacctcacgaatgtgccgagacataaaatcgc 2536 Query: 141 acaccccacgacagacagaccaaatgaaaactacggtagacaaatcatagcgcagccgac 200 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 2535 acaccccacgacagacagaccaaatggaaacgacggtagacaaatcatagcgcagccgac 2476 Query: 201 acttcaccctcccgctcgatg 221 ||||| |||||| |||||||| Sbjct: 2475 acttctccctcctgctcgatg 2455
>emb|AJ249623.1|TAE249623 Triticum aestivum partial ss1 gene for putative sucrose synthase, exon 1 Length = 445 Score = 135 bits (68), Expect = 6e-29 Identities = 127/144 (88%), Gaps = 7/144 (4%) Strand = Plus / Minus Query: 74 gcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatc 133 ||||||||||||||||||| |||| ||||||| |||||||| |||| ||||||||| | Sbjct: 424 gcggctggcatgaaccagcgagca---ctgcccaggacctcacaaatgtgccgagacaac 368 Query: 134 aaatcg-cacaccccacgacagacagaccaaatgaaaactacggtagacaaatcatagcg 192 |||| ||||| ||||||| ||||||||||||||||||||| |||||||||||| || Sbjct: 367 aaattaacacactccacgac---cagaccaaatgaaaactacggcagacaaatcataacg 311 Query: 193 cagccgacacttcaccctcccgct 216 |||||||||||||||||||||||| Sbjct: 310 cagccgacacttcaccctcccgct 287
>emb|AJ238219.1|TAE238219 Triticum aestivum ss1 gene (partial), exons 1-2, sequence ID pS11 Length = 487 Score = 119 bits (60), Expect = 4e-24 Identities = 125/144 (86%), Gaps = 7/144 (4%) Strand = Plus / Minus Query: 74 gcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatc 133 ||||||||||||||||||| |||| ||||||| |||||||| |||| ||||||||| | Sbjct: 447 gcggctggcatgaaccagcgagca---ctgcccaggacctcacaaatgtgccgagacaac 391 Query: 134 aaatcg-cacaccccacgacagacagaccaaatgaaaactacggtagacaaatcatagcg 192 |||| ||||| || |||| |||||| |||||||||||||| |||||||||||| || Sbjct: 390 aaattaacacactcctcgac---cagaccgaatgaaaactacggcagacaaatcataacg 334 Query: 193 cagccgacacttcaccctcccgct 216 |||||||||||||||||||||||| Sbjct: 333 cagccgacacttcaccctcccgct 310
>emb|AJ238217.1|TSP238217 Triticum speltoides ss1 gene (partial), exons 1-2, sequence ID pS10 Length = 496 Score = 117 bits (59), Expect = 2e-23 Identities = 128/148 (86%), Gaps = 11/148 (7%) Strand = Plus / Minus Query: 74 gcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatc 133 ||||||||||||||||||| |||| ||||||| |||||||| |||| ||||||||| | Sbjct: 456 gcggctggcatgaaccagcgagca---ctgcccaggacctcacaaatgtgccgagacaac 400 Query: 134 aaatcg-cacaccccacgacagacagaccaaatgaaaactacggtagaca----aatcat 188 |||| ||||||||||||| ||||||||||| ||||||||||||||| |||||| Sbjct: 399 aaattaacacaccccacgac---cagaccaaatggaaactacggtagacagacgaatcat 343 Query: 189 agcgcagccgacacttcaccctcccgct 216 | |||||||||||||||||||||||||| Sbjct: 342 aacgcagccgacacttcaccctcccgct 315
>emb|AJ238218.1|TAE238218 Triticum aestivum ss1 gene (partial), exons 1-2 sequence ID pS7 Length = 493 Score = 109 bits (55), Expect = 4e-21 Identities = 127/148 (85%), Gaps = 11/148 (7%) Strand = Plus / Minus Query: 74 gcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatc 133 ||||||||||||||||||| |||| ||||||| |||||||| |||| |||| |||| | Sbjct: 453 gcggctggcatgaaccagcgagca---ctgcccaggacctcacaaatgtgccgggacaac 397 Query: 134 aaatcg-cacaccccacgacagacagaccaaatgaaaactacggtagaca----aatcat 188 |||| ||||||||||||| ||||||||||| ||||||||||||||| |||||| Sbjct: 396 aaattaacacaccccacgac---cagaccaaatggaaactacggtagacagacaaatcat 340 Query: 189 agcgcagccgacacttcaccctcccgct 216 | |||||||||||||||||||||||||| Sbjct: 339 aacgcagccgacacttcaccctcccgct 312
>emb|AJ001117.1|TASUCSYN1 Triticum aestivum mRNA for sucrose synthase type I Length = 2676 Score = 109 bits (55), Expect = 4e-21 Identities = 127/148 (85%), Gaps = 11/148 (7%) Strand = Plus / Minus Query: 74 gcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatc 133 ||||||||||||||||||| |||| ||||| | |||||||| |||| ||||||||| | Sbjct: 2601 gcggctggcatgaaccagcgagca---ctgcctaggacctcacaaatgtgccgagacaac 2545 Query: 134 aaatcg-cacaccccacgacagacagaccaaatgaaaactacggtagaca----aatcat 188 |||| ||||||||||||| ||||||||||| ||||||||||||||| |||||| Sbjct: 2544 aaattaacacaccccacgac---cagaccaaatggaaactacggtagacagacaaatcat 2488 Query: 189 agcgcagccgacacttcaccctcccgct 216 | |||||||||||||||||||||||||| Sbjct: 2487 aacgcagccgacacttcaccctcccgct 2460 Score = 83.8 bits (42), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 6 cagacaacgaaacattgcattgaactctctgatgaaagatgaacaccacgggcaggcgtt 65 |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| Sbjct: 2676 cagacaacgaaacattgcattgaa--ctctgatgaaagatgaacaatatgggcaggcgtt 2619 Query: 66 tattc 70 ||||| Sbjct: 2618 tattc 2614
>gb|M26671.1|WHTSST1A Triticum aestivum sucrose synthase type 1 mRNA, 3' end Length = 888 Score = 109 bits (55), Expect = 4e-21 Identities = 127/148 (85%), Gaps = 11/148 (7%) Strand = Plus / Minus Query: 74 gcggctggcatgaaccagcaagcagcactgcccaagacctcacgaatgggccgagacatc 133 ||||||||||||||||||| |||| ||||| | |||||||| |||| ||||||||| | Sbjct: 813 gcggctggcatgaaccagcgagca---ctgcctaggacctcacaaatgtgccgagacaac 757 Query: 134 aaatcg-cacaccccacgacagacagaccaaatgaaaactacggtagaca----aatcat 188 |||| ||||||||||||| ||||||||||| ||||||||||||||| |||||| Sbjct: 756 aaattaacacaccccacgac---cagaccaaatggaaactacggtagacagacaaatcat 700 Query: 189 agcgcagccgacacttcaccctcccgct 216 | |||||||||||||||||||||||||| Sbjct: 699 aacgcagccgacacttcaccctcccgct 672 Score = 83.8 bits (42), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 6 cagacaacgaaacattgcattgaactctctgatgaaagatgaacaccacgggcaggcgtt 65 |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| Sbjct: 888 cagacaacgaaacattgcattgaa--ctctgatgaaagatgaacaatatgggcaggcgtt 831 Query: 66 tattc 70 ||||| Sbjct: 830 tattc 826
>emb|AJ249624.1|TAE249624 Triticum aestivum partial ss1 for putative sucrose synthase, exon 1, clone pI2 Length = 413 Score = 89.7 bits (45), Expect = 3e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 156 cagaccaaatgaaaactacggtagacaaatcatagcgcagccgacacttcaccctcccgc 215 |||||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||| Sbjct: 341 cagaccaaatgaaaactacggtagacaagttataacgcagctgacacttcaccctcccgc 282 Query: 216 t 216 | Sbjct: 281 t 281
>ref|XM_676233.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8056.2), mRNA Length = 3345 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccagcaagcagcactgcccaagac 111 |||||||||||||| ||||||||| Sbjct: 2050 ccagcaagcagcacagcccaagac 2027
>emb|AL023813.1|CEH02K04 Caenorhabditis elegans Fosmid H02K04, complete sequence Length = 3793 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tagcgcagccgacacttcac 207 |||||||||||||||||||| Sbjct: 439 tagcgcagccgacacttcac 458
>gb|AF412039.2| Bambusa oldhamii clone BoSUS4 sucrose synthase mRNA, complete cds Length = 2774 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 162 aaatgaaaactacggtagacaaatcata 189 ||||| ||||||||||| |||||||||| Sbjct: 2609 aaatgcaaactacggtaaacaaatcata 2582 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,847,722 Number of Sequences: 3902068 Number of extensions: 1847722 Number of successful extensions: 103966 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103927 Number of HSP's gapped (non-prelim): 20 length of query: 221 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 199 effective length of database: 17,147,199,772 effective search space: 3412292754628 effective search space used: 3412292754628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
