ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20e04 |
|---|---|
| Clone Library Name | barley_pub |
>H1_DROHY (P17268) Histone H1| Length = 249 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 333 KPKEPVPKTTPIGRRSSIASQAPTGASSIKPPKK 232 KPK P PKTT + +A+ +P A++ KP K Sbjct: 209 KPKTPKPKTTSAKPKKVVAAASPKKAAAKKPKAK 242
>OTC_RHOPA (Q6N0J0) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 310 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 304 AHRSPELDSQ--PGPDRSIFDQAPEKTGGPVKDDEGLLRWCLASV 176 AHR E+ + GP +FD+A + + +G+L WCL +V Sbjct: 269 AHRGEEVTDEVIDGPQSVVFDEAENR----LHAQKGILAWCLGAV 309
>NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)| (Transcriptional activator HAP2C) Length = 340 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 5 PASVPCSPSLIQIIRGRVTGTWLPAQLKSTHTVHTS*PASCVVSRYRFTRQKL 163 P + C+P ++ +I GRV LPA+L T V + + R R R KL Sbjct: 152 PQAPTCNPQMVSMIPGRVP---LPAELTETDPVFVNAKQYHAIMRRRQQRAKL 201
>PMS2_HUMAN (P54278) PMS1 protein homolog 2 (DNA mismatch repair protein PMS2)| Length = 862 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%) Frame = -1 Query: 330 PKEPVPKTTPIGRRSSIASQAPTGASS----IKPPKKRV 226 PK P P+ +P+G++ + S + +GA S ++P K+ V Sbjct: 437 PKTPEPRRSPLGQKRGMLSSSTSGAISDKGVLRPQKEAV 475
>SUFI_ECOLI (P26648) Protein sufI precursor| Length = 470 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/67 (34%), Positives = 30/67 (44%) Frame = +3 Query: 102 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPVFSGA*SKMLRSGPGWL 281 + P+ LVS LV L+ LVTD+ R P+ G P+ S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDIS--LGDDPG-- 363 Query: 282 SSSGDLW 302 +G LW Sbjct: 364 -INGQLW 369
>TINY_ARATH (Q39127) Transcriptional factor TINY| Length = 218 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Frame = +1 Query: 154 TKTIQASLQMQDTNAAAPRRPLRD---HPFFRGLDRRCSGRGLAGYRAPATYGRRLW 315 TK+ +AS Q+ N ++P++D HP +RG+ +R G+ ++ R P R+W Sbjct: 7 TKSWEASAVRQE-NEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKS-RIW 61
>ERF1_TOBAC (Q40476) Ethylene-responsive transcription factor 1| (Ethylene-responsive element-binding factor 1) (EREBP-1) (NtERF1) Length = 236 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 199 AAPRRPLRDHPFFRGLDRRCSGRGLAGYRAPATYGRRLW 315 AAP L +RG+ RR G+ A R PA G R+W Sbjct: 93 AAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVW 131
>NUMB1_CAEEL (Q9XTY6) Numb-related protein 1 (Protein kinase C adapter 1) (CKA1)| Length = 593 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = +1 Query: 109 ILTRVLCRVSLQVYKTKTIQASL---QMQDTNAAAPRRPL---RDHPFFRGLDRRCSGRG 270 + TR L R+S + KTK+IQ SL Q +AA P+ + F +G+DR Sbjct: 8 VFTRGLSRISRRKKKTKSIQNSLVSEQQPSFDAAIVPMPIPNDKSSIFSKGMDRLRRSLR 67 Query: 271 LAGYRAPATYGRRL 312 L R ++ R L Sbjct: 68 LPKKRRDRSHDRHL 81
>AROC_TOXGO (O02607) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 536 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = +1 Query: 154 TKTIQASLQMQDTNAAAPRRPLRDHPFFRGLDRRCSGRGLAGYRAPATYGRRLWNRFLRF 333 T +AS+ NAA+ P+ P G+ RC G A T G ++ R + F Sbjct: 402 TSKSEASITRLSGNAASGGAPVCRIPLGEGVRIRCGSNNAGGTLAGITSGENIFFR-VAF 460 Query: 334 QPESS 348 +P SS Sbjct: 461 KPVSS 465
>ZBTB8_HUMAN (Q8NAP8) Zinc finger and BTB domain-containing protein 8| Length = 512 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 148 YKTKTIQASLQMQDTNAAAPRRPLRDHPFFRGLDRRCSGRGLA 276 Y ++ L+ N+AAP + DH F R L+ R G G+A Sbjct: 272 YSNYHVKQFLEALLRNSAAPSKDDADHHFSRSLEGRPEGAGVA 314
>Y115_ADE02 (P03290) Hypothetical protein E-115| Length = 115 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = -1 Query: 375 FFLTKNGQ--PAAFRLKP------KEPVPKTTPIGRRSSIASQAPTGASSIKPPKKRVVP 220 +FLT NGQ P ++ +P + P P+ R SS + T + PP+ P Sbjct: 5 WFLTPNGQSSPGSWNARPSAGPAARMPTPRNRYFSRPSSTPLKVCTAPRAAPPPRASCAP 64 Query: 219 *RTTR 205 T R Sbjct: 65 RATPR 69
>SUFI_SALTY (P0A1C5) Protein sufI precursor| Length = 470 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +3 Query: 102 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPVFSGA*SKMLRSGPGWL 281 + P+ LVS LV L+ LVTD R P+ +G PV S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSRDIS--LGDDPG-- 363 Query: 282 SSSGDLW 302 +G LW Sbjct: 364 -INGQLW 369
>SUFI_SALTI (P0A1C6) Protein sufI precursor| Length = 470 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +3 Query: 102 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPVFSGA*SKMLRSGPGWL 281 + P+ LVS LV L+ LVTD R P+ +G PV S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSRDIS--LGDDPG-- 363 Query: 282 SSSGDLW 302 +G LW Sbjct: 364 -INGQLW 369
>ZIPA_PSEPK (Q88F24) Cell division protein zipA homolog| Length = 297 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -3 Query: 370 PDEERAASCFQAETEGTCSKDDAHRSPELDSQPGPDRSIFDQAPEKTGGPVK 215 PDEE + AE G D H+ PELD P S + E+ PVK Sbjct: 47 PDEEGGS----AEVLGPSRVLDTHKEPELDESDLPSLSASARDREREPKPVK 94
>YMM1_CAEEL (P34489) Hypothetical protein K01B6.1| Length = 732 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 357 GQPAAFRLKPKEPVPKTTPIGRRSSIASQAPTGASSI 247 G+P R PK P T P GRR S AS P+ +++ Sbjct: 233 GRPMQGRSSPKSPTSPTQP-GRRGSQASSLPSRRNTV 268
>SMG1_MOUSE (Q8BKX6) Serine/threonine-protein kinase SMG1 (EC 2.7.11.1) (SMG-1)| Length = 3658 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 171 LVTDARHQRSSPSSSFTGPPVFSGA 245 LVTDA ++ SSP+SS T P F+ A Sbjct: 3514 LVTDAANECSSPTSSATYQPSFAAA 3538
>SMG1_HUMAN (Q96Q15) Serine/threonine-protein kinase SMG1 (EC 2.7.11.1) (SMG-1)| (hSMG-1) (Lambda/iota protein kinase C-interacting protein) (Lambda-interacting protein) (61E3.4) Length = 3657 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 171 LVTDARHQRSSPSSSFTGPPVFSGA 245 LVTDA ++ SSP+SS T P F+ A Sbjct: 3513 LVTDATNECSSPTSSATYQPSFAAA 3537
>SMI1_ASHGO (Q75AQ9) KNR4/SMI1 homolog| Length = 657 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = -1 Query: 369 LTKNGQPAAFRLKPKEPVPKTTPIGRRSSIASQAPTGASSIKPPKKRVVP 220 LT+ + KP P P T P R S A + +PPKK P Sbjct: 416 LTQTDASSKGTTKPATPNPMTAPTVIRVSTPGSPSAAAEAPEPPKKATPP 465
>UBP28_HUMAN (Q96RU2) Ubiquitin carboxyl-terminal hydrolase 28 (EC 3.1.2.15)| (Ubiquitin thioesterase 28) (Ubiquitin-specific-processing protease 28) (Deubiquitinating enzyme 28) Length = 1077 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +1 Query: 73 ACPVEIDTYGTYILTRVLCRVSLQVYKTKT-IQASLQMQDTNAAAPRRPL 219 +CP E DT+ T L+ V C VS Q K T ++S Q ++ ++P L Sbjct: 460 SCPPESDTHMTLPLSSVHCSVSDQTSKESTSTESSSQDVESTFSSPEDSL 509
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = -1 Query: 366 TKNGQPAAFRLKPKEPVPKTTPIGRRSSIASQAP-----TGASSIKPPKKRVVP 220 T +G P P P P + P+G SQAP T A+S PP ++P Sbjct: 1083 TASGGPVITAFYPGSPAPTSAPLGP----PSQAPPSLVYTVATSTTPPAATILP 1132
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 327 KEPVPKTTPIGRRSSIASQAPTGASSIKPP 238 +EP+P TTP + + + AP + KPP Sbjct: 2307 EEPLPTTTPAAIKEAAGAPAPAPLAGQKPP 2336
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -1 Query: 369 LTKNGQPAAFRLKPKEPVPKTTPIGRRSSIASQAPTGASSIKP 241 +++ G PA +P P P + P G +S++ PTG S +P Sbjct: 85 MSRPGPPAGMA-RPGGPPPVSQPAGFQSNVPLNRPTGPPSRQP 126
>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)| Length = 900 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -1 Query: 330 PKEPVPKTTPIGRRSSIASQAPTGASSIKPPKK 232 P++P P S+ S + +G+SS++PPK+ Sbjct: 688 PQKPAPPADQASTSSASTSGSGSGSSSMQPPKR 720
>DRE1F_ARATH (Q9LN86) Dehydration-responsive element-binding protein 1F (DREB1F| protein) Length = 209 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +1 Query: 202 APRRPLRD--HPFFRGLDRRCSGRGLAGYRAPATYGRRLW 315 A RR ++ HP +RG+ RR + + R P T+ RR+W Sbjct: 17 AGRRVFKETRHPVYRGIRRRNGDKWVCEVREP-THQRRIW 55
>YTZF_BACSU (O32068) Hypothetical RNA pseudouridine synthase ytzF (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 157 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -1 Query: 369 LTKNGQPAAFRLKPKEPVPKTTPIGRRSSIASQ 271 LT +GQ A L PK+ VPKT + +S I+ + Sbjct: 30 LTNDGQLAHRLLSPKKHVPKTYEVHLKSQISRE 62
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -1 Query: 342 FRLKPKEPVPKTTPIGRRSSIASQAPTGASSIKPPKKRVVP 220 F+L P P P TTP S +A+ T A+ PK + P Sbjct: 226 FKLTPPPPDPPTTP---HSKVATSPKTTAAKPVTPKPSLAP 263
>VD4L_CWPXG (O73579) Ankyrin repeat protein D4L/I2R| Length = 672 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 87 NRHIRYIHPNPRLVSCLVTGLQDKNYPSLV 176 NR IRY++P P L + D ++PS V Sbjct: 532 NRDIRYLYPEPLLACIRYALILDDDFPSKV 561
>SOK2_YEAST (P53438) Protein SOK2| Length = 785 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = +3 Query: 153 DKNYPSLVTDARHQRSSPSSSFT---GPPVFSGA*SKMLRSGPGWLSSSGDLWASS 311 +K Y + +HQ+ + T PP A SK +SGP SSSG + +S Sbjct: 198 EKTYSTFEQQQQHQQQQQLQAQTYPAQPPKIGNAFSKFSKSGPPSDSSSGSMSPNS 253
>GABPA_MOUSE (Q00422) GA-binding protein alpha chain (GABP-alpha subunit)| Length = 454 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -3 Query: 307 DAHRSPELDSQPGPDRSIFDQAPEKTGGPVK 215 DAH D Q PDRS+FDQ KT G V+ Sbjct: 64 DAHEICLQDIQLDPDRSLFDQG-VKTDGTVQ 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,267,206 Number of Sequences: 219361 Number of extensions: 1353308 Number of successful extensions: 4044 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3886 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4042 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
