ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome... 40 5.0
2gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 40 5.0
3gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome... 40 5.0
4ref|XM_315682.2| Anopheles gambiae str. PEST ENSANGP00000021730 ... 40 5.0
5gb|AY104486.1| Zea mays PCO109435 mRNA sequence 40 5.0

>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   caagacaaaaactatccaagcctc 173
             ||||||||||||| ||||||||||
Sbjct: 31013 caagacaaaaactctccaagcctc 31036



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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   cggtcggggcctggctggct 280
             ||||||||||||||||||||
Sbjct: 96424 cggtcggggcctggctggct 96405



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>gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome 10, complete sequence
          Length = 203324

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    caagacaaaaactatccaagcctc 173
              ||||||||||||| ||||||||||
Sbjct: 203093 caagacaaaaactctccaagcctc 203116



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>ref|XM_315682.2| Anopheles gambiae str. PEST ENSANGP00000021730
           (ENSANGG00000019241), partial mRNA
          Length = 585

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 gcagcagcccctcgtcgtcc 215
           ||||||||||||||||||||
Sbjct: 314 gcagcagcccctcgtcgtcc 333



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>gb|AY104486.1| Zea mays PCO109435 mRNA sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgggggcttgatcgaagatg 257
           ||||||||||||||||||||
Sbjct: 62  cgggggcttgatcgaagatg 81


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,235,705
Number of Sequences: 3902068
Number of extensions: 2235705
Number of successful extensions: 38146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38141
Number of HSP's gapped (non-prelim): 5
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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