ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OR3A2_PANTR (Q9TU97) Olfactory receptor 3A2 31 1.3
2BRAF_PSEAE (P21629) High-affinity branched-chain amino acid tran... 30 2.9
3PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP) 29 4.9
4VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF) 28 8.4

>OR3A2_PANTR (Q9TU97) Olfactory receptor 3A2|
          Length = 315

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 183 ACGSLRRGSASSWQSVLTCCVSHVGVVGLMCLFFG----RYMR-GAEQS 52
           A   LR  S   W+   + C SH+ VV   CLFFG     YMR G+E++
Sbjct: 225 AAAVLRIRSVEGWKKAFSTCGSHLTVV---CLFFGTGIFNYMRLGSEEA 270



to top

>BRAF_PSEAE (P21629) High-affinity branched-chain amino acid transport|
           ATP-binding protein braF
          Length = 255

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 42  RSYKTVLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHKLSYSELLYSAATV 221
           R+++ V L        N  V QHRH+  N L    KT     S    + Y+        +
Sbjct: 84  RTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNL 143

Query: 222 SQHRNKSAG 248
           ++  N+SAG
Sbjct: 144 TEFANRSAG 152



to top

>PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP)|
          Length = 2135

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -3

Query: 453 PGAAAPAAFSIWGPWIPSIXXXXXXXXXXXXPSEPGGRNPERLPG 319
           PGA+ P+  S WGPW  S               EP   +P+  PG
Sbjct: 726 PGAS-PSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPG 769



to top

>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 95  ISPTTPTCDTQHVKTLCQD 151
           +SP T TC + HVK +CQ+
Sbjct: 305 VSPCTRTCQSLHVKEVCQE 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,778,396
Number of Sequences: 219361
Number of extensions: 887882
Number of successful extensions: 2531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top