Clone Name | rbastl20e01 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 cagtgagccagcaccgcaaca 237 ||||||||||||||||||||| Sbjct: 1078300 cagtgagccagcaccgcaaca 1078280
>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence Length = 197144 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 ttgagaaggctgctggggctg 443 ||||||||||||||||||||| Sbjct: 12206 ttgagaaggctgctggggctg 12226
>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence Length = 152668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 ttgagaaggctgctggggctg 443 ||||||||||||||||||||| Sbjct: 23766 ttgagaaggctgctggggctg 23786
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 ctgctggggctgctgcgcctg 452 ||||||||||||||||||||| Sbjct: 2094610 ctgctggggctgctgcgcctg 2094630 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 aggctgctggggctgctgcg 448 |||||||||||||||||||| Sbjct: 3302995 aggctgctggggctgctgcg 3302976
>gb|AC135409.3| Rattus norvegicus 8 BAC CH230-416D7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 231716 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 161 cctctcctcagcgagccacaagctcagc 188 |||||||||||| | ||||||||||||| Sbjct: 98437 cctctcctcagctacccacaagctcagc 98464
>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland Research Institute) complete sequence Length = 232401 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 gacaacaccgacatgtgacacgca 126 |||||||||||| ||||||||||| Sbjct: 1714 gacaacaccgacctgtgacacgca 1691
>ref|XM_676721.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8544.2), mRNA Length = 900 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gaaggctgctggggctgctg 446 |||||||||||||||||||| Sbjct: 517 gaaggctgctggggctgctg 536 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gaaggctgctggggctgctg 446 |||||||||||||||||||| Sbjct: 265 gaaggctgctggggctgctg 284
>gb|AC121802.3| Mus musculus BAC clone RP23-434N18 from chromosome 18, complete sequence Length = 187787 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 aaggctgctggggctgctgc 447 |||||||||||||||||||| Sbjct: 59499 aaggctgctggggctgctgc 59518
>emb|Z82244.1|HS286B10 Human DNA sequence from clone CTA-286B10 on chromosome 22, complete sequence Length = 87869 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gagaaggctgctggggctgc 444 |||||||||||||||||||| Sbjct: 7246 gagaaggctgctggggctgc 7265
>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the NET1 gene for neuroepithelial cell transforming gene 1, the gene for calmodulin-like skin protein (CLSP), the CALML3 gene for calmodulin-like 3 (CLP) and four CpG islands, complete sequence Length = 183441 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggttctgagggtggtgctcc 369 |||||||||||||||||||| Sbjct: 84264 ggttctgagggtggtgctcc 84245
>gb|AC079223.11| Mus musculus chromosome 1, clone RP22-318M10, complete sequence Length = 137729 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 aagctcagctactctgagct 199 |||||||||||||||||||| Sbjct: 36948 aagctcagctactctgagct 36929
>gb|AC079383.17| Homo sapiens Xp BAC RP11-30A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151276 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 tgggtatccatggcccccat 421 |||||||||||||||||||| Sbjct: 82365 tgggtatccatggcccccat 82346
>dbj|AB118237.1| Rattus norvegicus rGGPS1 gene for geranylgeranyl diphosphate synthase1, complete cds, alternative splicing Length = 13601 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 gacaacaccgacatgtgacacgca 126 |||||||||||| ||||||||||| Sbjct: 5463 gacaacaccgacctgtgacacgca 5486
>gb|AY107024.1| Zea mays PCO127729 mRNA sequence Length = 576 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 acacgcaacacgttaaaacgctct 143 |||||||||| ||||||||||||| Sbjct: 445 acacgcaacatgttaaaacgctct 422
>gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, complete sequence Length = 169324 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 aagctcagctactctgagct 199 |||||||||||||||||||| Sbjct: 58041 aagctcagctactctgagct 58022 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,260,354 Number of Sequences: 3902068 Number of extensions: 3260354 Number of successful extensions: 53752 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53662 Number of HSP's gapped (non-prelim): 90 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)