>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 6e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                            
Query: 195      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 254
                |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 32987631 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 32987572

                                                         
Query: 255      cgcttgaagccgaatatgtcggtaatccggcaagttttggg 295
                |||||||||||||||||||| || || ||| ||||||||||
Sbjct: 32987571 cgcttgaagccgaatatgtcagtgattcggtaagttttggg 32987531



 Score =  113 bits (57), Expect = 3e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                            
Query: 195      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 254
                |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 32969862 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 32969803

                                                         
Query: 255      cgcttgaagccgaatatgtcggtaatccggcaagttttggg 295
                |||||||||||||||||||| || || ||| ||||||||||
Sbjct: 32969802 cgcttgaagccgaatatgtcagtgattcggtaagttttggg 32969762

>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  129 bits (65), Expect = 6e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                         
Query: 195   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 254
             |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 53859 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 53800

                                                      
Query: 255   cgcttgaagccgaatatgtcggtaatccggcaagttttggg 295
             |||||||||||||||||||| || || ||| ||||||||||
Sbjct: 53799 cgcttgaagccgaatatgtcagtgattcggtaagttttggg 53759



 Score =  113 bits (57), Expect = 3e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                         
Query: 195   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 254
             |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 36090 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 36031

                                                      
Query: 255   cgcttgaagccgaatatgtcggtaatccggcaagttttggg 295
             |||||||||||||||||||| || || ||| ||||||||||
Sbjct: 36030 cgcttgaagccgaatatgtcagtgattcggtaagttttggg 35990

>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score =  125 bits (63), Expect = 9e-26
 Identities = 90/99 (90%)
 Strand = Plus / Minus

                                                                        
Query: 197  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 256
            |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||||
Sbjct: 2838 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggatcg 2779

                                                   
Query: 257  cttgaagccgaatatgtcggtaatccggcaagttttggg 295
            |||||||||||||||||| || || ||| ||||||||||
Sbjct: 2778 cttgaagccgaatatgtcagtgattcggtaagttttggg 2740

>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
            insert sequence
          Length = 3262

 Score =  113 bits (57), Expect = 3e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 254
            |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 3047 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 2988

                                                     
Query: 255  cgcttgaagccgaatatgtcggtaatccggcaagttttggg 295
            |||||||||||||||||||| || || ||| ||||||||||
Sbjct: 2987 cgcttgaagccgaatatgtcagtgattcggtaagttttggg 2947

>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score =  109 bits (55), Expect = 5e-21
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                        
Query: 197  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 256
            |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||||
Sbjct: 2841 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggatcg 2782

                                                   
Query: 257  cttgaagccgaatatgtcggtaatccggcaagttttggg 295
            |||||||||||||||||| || || ||| ||||||||||
Sbjct: 2781 cttgaagccgaatatgtcagtgattcggtaagttttggg 2743

>gb|AY109443.1| Zea mays CL3420_1 mRNA sequence
          Length = 1424

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                       
Query: 195 tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 254
           ||||||||||| ||||||| ||| ||||||||||| || |||| || ||| ||||  |||
Sbjct: 159 tgtcagtccatggtgatcctgcccggacctcccttgagtgagctgtacagcggcctcgat 218

                                     
Query: 255 cgcttgaagccgaatatgtcggtaat 280
           || ||||||||||||||||| |||||
Sbjct: 219 cgtttgaagccgaatatgtctgtaat 244

>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone
              BACR20B09, complete sequence
          Length = 177997

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 125    gaaaaatcaatcaaaattgtgttc 148
              ||||||||||||||||||||||||
Sbjct: 145734 gaaaaatcaatcaaaattgtgttc 145711

>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete
              sequence
          Length = 270771

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 125    gaaaaatcaatcaaaattgtgttc 148
              ||||||||||||||||||||||||
Sbjct: 199509 gaaaaatcaatcaaaattgtgttc 199486

>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    gagaaaaatcaatcaaaattg 143
              |||||||||||||||||||||
Sbjct: 121168 gagaaaaatcaatcaaaattg 121188

>emb|BX571838.9| Zebrafish DNA sequence from clone DKEY-205N7 in linkage group 13,
             complete sequence
          Length = 124398

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   atcaatcaaaattgtgttcat 150
             |||||||||||||||||||||
Sbjct: 29706 atcaatcaaaattgtgttcat 29686

>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete
             sequence
          Length = 127959

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   gagaaaaatcaatcaaaattg 143
             |||||||||||||||||||||
Sbjct: 73150 gagaaaaatcaatcaaaattg 73170

>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ccggcctggacctcccttca 231
             ||||||||||||||||||||
Sbjct: 79761 ccggcctggacctcccttca 79780

>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   agaaaaatcaatcaaaattg 143
             ||||||||||||||||||||
Sbjct: 72527 agaaaaatcaatcaaaattg 72508

>emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chromosome 13 Contains a
              novel pseudogene and a keratin 18 (KRT18) (K18, CYK18)
              pseudogene, complete sequence
          Length = 156442

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    agaaaaatcaatcaaaattg 143
              ||||||||||||||||||||
Sbjct: 103271 agaaaaatcaatcaaaattg 103252

>emb|AJ242954.1|MMU242954 Mus musculus partial mRNA for dysferlin (dysf gene)
          Length = 5078

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  ccggcctggacctcccttca 231
            ||||||||||||||||||||
Sbjct: 3995 ccggcctggacctcccttca 4014

>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   gagaaaaatcaatcaaaatt 142
             ||||||||||||||||||||
Sbjct: 32444 gagaaaaatcaatcaaaatt 32425

>dbj|AK087986.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430001M20
            product:dysferlin, full insert sequence
          Length = 2533

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  ccggcctggacctcccttca 231
            ||||||||||||||||||||
Sbjct: 1449 ccggcctggacctcccttca 1468

>gb|BC043692.1| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:5150289), partial
           cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 ccggcctggacctcccttca 231
           ||||||||||||||||||||
Sbjct: 949 ccggcctggacctcccttca 968

>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   agaaaaatcaatcaaaattg 143
             ||||||||||||||||||||
Sbjct: 45960 agaaaaatcaatcaaaattg 45941

>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    agaaaaatcaatcaaaattg 143
              ||||||||||||||||||||
Sbjct: 154108 agaaaaatcaatcaaaattg 154127

>ref|XM_232123.3| PREDICTED: Rattus norvegicus dysferlin (predicted) (Dysf_predicted),
            mRNA
          Length = 6810

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  ccggcctggacctcccttca 231
            ||||||||||||||||||||
Sbjct: 5673 ccggcctggacctcccttca 5692

>dbj|AK131144.1| Mus musculus mRNA for mFLJ00175 protein
          Length = 6660

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  ccggcctggacctcccttca 231
            ||||||||||||||||||||
Sbjct: 5574 ccggcctggacctcccttca 5593

>emb|Z70750.1|CEC50F4 Caenorhabditis elegans Cosmid C50F4, complete sequence
          Length = 36171

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   gaaaaatcaatcaaaattgt 144
             ||||||||||||||||||||
Sbjct: 23044 gaaaaatcaatcaaaattgt 23063

>emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 map Xq28, complete sequence
          Length = 228540

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    agaaaaatcaatcaaaattg 143
              ||||||||||||||||||||
Sbjct: 115205 agaaaaatcaatcaaaattg 115224

>gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, complete sequence
          Length = 139303

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   gagaaaaatcaatcaaaatt 142
             ||||||||||||||||||||
Sbjct: 15634 gagaaaaatcaatcaaaatt 15615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,067,323
Number of Sequences: 3902068
Number of extensions: 2067323
Number of successful extensions: 41541
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41503
Number of HSP's gapped (non-prelim): 38
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)