>RUVB_SYNSC (Q3AND8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 348

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = -3

Query: 240 PDARRSFFDTSMHVP--ASGLDRR-----PARGRGGRSTDWHAVGRTVSMHACMHRSASS 82
           P AR S   +    P  A+ L RR       RG GG + +   VG  +S+H   HR   +
Sbjct: 220 PQARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGGAINQALVGEALSLHRVDHRGLDA 279

Query: 81  TCRRALMLFI 52
           + RR L L I
Sbjct: 280 SDRRLLQLLI 289

>HUPK_RHOCA (P30797) Hydrogenase expression/formation protein hupK|
          Length = 294

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 177 RPARGRGGRSTDWHAVGRTVSMHA-CMHRSASSTCRRALML 58
           R A  R GR   W A+GR V +HA  +   A++T R  L L
Sbjct: 180 RQAEARFGRGPFWRALGRIVDLHAFALAPPAAATPRPGLAL 220

>PTPA2_ASPFU (Q4WSA8) Serine/threonine-protein phosphatase 2A activator 2 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2)
           (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl
           phosphatase activator 2)
          Length = 422

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
 Frame = +2

Query: 161 LPLAGRRSSPLAGTCIDVSKK---LRRASGQRWGPDDLQ------------DLDHLRHGR 295
           +P     SSP AGT +D+SKK   LR +     GP   +            DL    + R
Sbjct: 2   MPSHATMSSPPAGTKLDLSKKLSELRASRRSHSGPSPREPTPVTPPLPSPPDLSTHTYTR 61

Query: 296 PVRRDLRR 319
           PVRR L R
Sbjct: 62  PVRRILSR 69

>YJDA_ECOLI (P16694) Hypothetical protein yjdA|
          Length = 742

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 233 ASGQRWGPDDLQDLDHLRH 289
           A G+RW   DL DL+H+RH
Sbjct: 370 ALGRRWRHADLADLEHIRH 388

>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)|
           (5-methyltetrahydrofolate--homocysteine
           methyltransferase) (Methionine synthase, vitamin-B12
           dependent isozyme) (MS)
          Length = 1195

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +2

Query: 62  INARRHVLLADLCMHACMDTVRPTACQSVDLPPLPLAGRRSSPLAGTCIDVSKKLRRASG 241
           +N     +L  + +H CM      A  S +   LPLA +        C+D+    R   G
Sbjct: 549 LNPAARQVLNSIFLHECMQVGMDAAIVSAN-KILPLA-KIDPEQQQVCLDLIYDRREFEG 606

Query: 242 QRWGPDDLQDLDHLRHGRPVRRD 310
           +R   D L  L  L  G+  +RD
Sbjct: 607 ERCTYDPLTKLTTLFEGKTTKRD 629

>DPOLA_TRYBB (P27727) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA|
           polymerase I)
          Length = 1339

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 125 VPCPCMHACIDPRVVR 78
           +P PC+H CI P+V+R
Sbjct: 796 LPSPCLHKCILPKVIR 811

>SLBP_HUMAN (Q14493) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 270

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 227 RRASGQRWGPDDLQDLDH 280
           RRA G+RW P+D ++ +H
Sbjct: 33  RRADGRRWRPEDAEEAEH 50

>ILVG_MYCTU (P66946) Probable acetolactate synthase (EC 2.2.1.6)|
           (Acetohydroxy-acid synthase) (ALS)
          Length = 547

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 RASGQRWGPDDLQDLDHLRHGRPVRR 307
           RA   RWG   LQ++DH+    PV R
Sbjct: 108 RAPALRWGMGSLQEIDHVPFVAPVAR 133

>ILVG_MYCBO (P66947) Probable acetolactate synthase (EC 2.2.1.6)|
           (Acetohydroxy-acid synthase) (ALS)
          Length = 547

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 RASGQRWGPDDLQDLDHLRHGRPVRR 307
           RA   RWG   LQ++DH+    PV R
Sbjct: 108 RAPALRWGMGSLQEIDHVPFVAPVAR 133

>ABEC1_MONDO (Q9TUI7) Apolipoprotein B mRNA-editing enzyme (EC 3.5.4.-)|
           (APOBEC-1)
          Length = 235

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 42  EHRQ*-RASMHAGTY-----YSRIYACMHAWTRYVQLHANQWISLPYLWLVV 179
           +HRQ  +  +H+G       YS  + C   +  Y Q   + W   PYLW+++
Sbjct: 125 QHRQGLKELVHSGVTIQIMSYSEYHYCWRNFVDYPQGEEDYWPKYPYLWIML 176

>PURL_SYNPX (Q7UA92) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 768

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 236 MHGAAFLTRQCTYLPAGSIDDQPEVGEGDPLIGMQLDVPC 117
           M GA+F + +   L A S+DD+P V  GDP +   L   C
Sbjct: 217 MGGASFASAE---LSADSLDDRPAVQVGDPFLEKGLIEAC 253

>DNAA_ACIAD (Q6FG21) Chromosomal replication initiator protein dnaA|
          Length = 465

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 90  RIYACMHAWTRYVQLHANQWISLPYLWLVVDRARWQVRALTCQKSCAV-HPGSDGALMTC 266
           R+YA    WTRY+Q H  + IS+    L   R R QV  L   +  A+  P    A  T 
Sbjct: 36  RLYAPNPYWTRYIQEHHLELISILVEQLSEGRIR-QVEILVDSRPGAILSPAEQPATTTA 94

Query: 267 RIWTTSAMDGR 299
            + +T  +  R
Sbjct: 95  ALSSTPVVPQR 105

>FBLN1_CAEEL (O77469) Fibulin-1 precursor|
          Length = 728

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 92  DLCMHACMDTVRPTACQSVDLPPLPLAGRRSSPLAGTCIDVSK 220
           DLCM  C++T     CQ    PP    G +  P   TC+DV +
Sbjct: 528 DLCMGGCINTKGSYLCQ---CPP----GYKIQPDGRTCVDVDE 563

>VL1_HPV61 (P50822) Major capsid protein L1|
          Length = 505

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 195 QVRALTCQKSCAVHPGSDGALMTCRIWTTSAMD 293
           Q RA+TCQK  A  P  +        WT    D
Sbjct: 423 QSRAITCQKGAAAPPPKEDRYAKLSFWTVDLRD 455

>YSNA_STRPR (P54992) Hypothetical 45.4 kDa protein in snaA-snaB intergenic|
           region (ORF401)
          Length = 402

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 56  KSINARRHVLLADLCMHACMDTVRP 130
           + +NA R++L A L   AC D +RP
Sbjct: 352 RDVNAARNILAAGLAASACGDGIRP 376

>FDFT_HUMAN (P37268) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 417

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 313 QIPSNRPSMAEVVQILQVIRAPSLPGC 233
           +IP + PS ++  QI+  IR  +LP C
Sbjct: 348 RIPDSDPSSSKTRQIISTIRTQNLPNC 374

>FDFT_MOUSE (P53798) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 416

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 313 QIPSNRPSMAEVVQILQVIRAPSLPGC 233
           +IP++ PS ++  Q++  IR  +LP C
Sbjct: 348 RIPNSDPSSSKTKQVISKIRTQNLPNC 374

>PURL_PROMA (Q7VEK9) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 793

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 236 MHGAAFLTRQCTYLPAGSIDDQPEVGEGDPLIGMQLDVPC 117
           M GA+F + + T     SIDD+P V  GDP +   L   C
Sbjct: 222 MGGASFASSELTQ---ASIDDRPAVQVGDPFLEKGLIEGC 258

>NIA_ASPNG (P36858) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 867

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 197 LPAGSIDDQP-EVGEGDPLIGMQLDVPCPCMHACIDPRVVR-AGVH 66
           LPA  + D P      +P   + +D P P  H   DPR++R  GVH
Sbjct: 31  LPAVELSDIPLPPPSKEPTEVLSIDKPTPDYHVPRDPRLIRLTGVH 76

>Y674_TREPA (O83680) Hypothetical protein TP0674|
          Length = 202

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 198 PASGLDRRPARGRGGRSTDWHAVGRTVSMH 109
           P +G    PA  RGG+ T W  + R+V +H
Sbjct: 173 PHAGELFHPAERRGGKGTTWVLLKRSVPLH 202

>LCP2_HUMAN (Q13094) Lymphocyte cytosolic protein 2 (SH2 domain-containing|
           leucocyte protein of 76 kDa) (SLP-76 tyrosine
           phosphoprotein) (SLP76)
          Length = 533

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 140 QSVDLPPLPLAGRRSSPLAGTCIDVSKKLRRASGQRWGPDDLQDLDHLRHGRPV 301
           Q   LPP      RSSPL G    V K         WGPD  ++ +   H RP+
Sbjct: 283 QKPPLPPTTERHERSSPLPGKKPPVPK-------HGWGPDRRENDEDDVHQRPL 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,096,095
Number of Sequences: 219361
Number of extensions: 863445
Number of successful extensions: 2552
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2552
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)