ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 196 1e-47
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 50 0.002
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.030
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.030
5emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.47
6emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.47
7gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosom... 38 7.3
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.3
9gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 7.3
10ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA syntheta... 38 7.3
11emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 ... 38 7.3
12emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 7.3
13emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 7.3
14dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 7.3
15gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
17gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 7.3
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
19gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
20gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA syntheta... 38 7.3
21gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 7.3
22dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
23dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
24gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, comple... 38 7.3
25emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 7.3
26gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial p... 38 7.3
27gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial p... 38 7.3

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  196 bits (99), Expect = 1e-47
 Identities = 127/136 (93%), Gaps = 4/136 (2%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttcattattgggcaaaacaagggattttttctgcacacaacaatgcattgaccggtagcc 79
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 80   agctgagctgagcttccgcatgccgatcaaacccgtcgggcacccaccc----ttattgc 135
            ||||||||||||||||||||||||||||| |||||||| |||| |||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                            
Query: 136  cttaattattcatgca 151
            ||||||||||||||||
Sbjct: 2776 cttaattattcatgca 2761



to top

>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 13   catcgacttcattattgggcaaaacaagggattttttctgcacac 57
            ||||||||| |||||||||||||  |||||| |||||||| ||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacac 1055



to top

>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 127    ccttattgccttaattattcatg 149
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 127   ccttattgccttaattattcatg 149
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 127      ccttattgccttaattattcatg 149
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 127      ccttattgccttaattattcatg 149
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



to top

>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    aaacaagggattttttctgca 54
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



to top

>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    gcaaaacaagggattttttct 51
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



to top

>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence
          Length = 182827

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 130   tattgccttaattattcat 148
             |||||||||||||||||||
Sbjct: 27354 tattgccttaattattcat 27336



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      tgggcaaaacaagggattt 46
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



to top

>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    ccagctgagctgagcttcc 96
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



to top

>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase
            (GLP_661_10786_9158) partial mRNA
          Length = 1629

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   cacaacaatgcattgaccg 73
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



to top

>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3,
             complete sequence
          Length = 162642

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    attttttctgcacacaaca 61
             |||||||||||||||||||
Sbjct: 61311 attttttctgcacacaaca 61293



to top

>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     gcaaaacaagggatttttt 49
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



to top

>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    gcaaaacaagggatttttt 49
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 43      attttttctgcacacaacaatgcattg 69
               |||||||| |||||| |||||||||||
Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082



to top

>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tgggcaaaacaagggattt 46
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 5        catcacaccatcgacttcattat 27
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



to top

>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    agctgagctgagcttccgc 98
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      tgggcaaaacaagggattt 46
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



to top

>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    tgggcaaaacaagggattt 46
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



to top

>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds
          Length = 1629

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   cacaacaatgcattgaccg 73
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



to top

>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     agctgagctgagcttccgc 98
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



to top

>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     catcacaccatcgacttcattat 27
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



to top

>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tgggcaaaacaagggattt 46
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



to top

>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence
          Length = 228343

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 130   tattgccttaattattcat 148
             |||||||||||||||||||
Sbjct: 35076 tattgccttaattattcat 35094



to top

>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     gcaaaacaagggatttttt 49
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



to top

>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B
           mRNA, complete cds
          Length = 681

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 12  ccatcgacttcattattgg 30
           |||||||||||||||||||
Sbjct: 271 ccatcgacttcattattgg 253



to top

>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A
           mRNA, complete cds
          Length = 692

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 12  ccatcgacttcattattgg 30
           |||||||||||||||||||
Sbjct: 328 ccatcgacttcattattgg 310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,206,722
Number of Sequences: 3902068
Number of extensions: 1206722
Number of successful extensions: 80413
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80231
Number of HSP's gapped (non-prelim): 181
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top