Clone Name | rbastl20d06 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 196 bits (99), Expect = 1e-47 Identities = 127/136 (93%), Gaps = 4/136 (2%) Strand = Plus / Minus Query: 20 ttcattattgggcaaaacaagggattttttctgcacacaacaatgcattgaccggtagcc 79 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 80 agctgagctgagcttccgcatgccgatcaaacccgtcgggcacccaccc----ttattgc 135 ||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 136 cttaattattcatgca 151 |||||||||||||||| Sbjct: 2776 cttaattattcatgca 2761
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 13 catcgacttcattattgggcaaaacaagggattttttctgcacac 57 ||||||||| ||||||||||||| |||||| |||||||| |||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacac 1055
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 127 ccttattgccttaattattcatg 149 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 127 ccttattgccttaattattcatg 149 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 127 ccttattgccttaattattcatg 149 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 127 ccttattgccttaattattcatg 149 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaacaagggattttttctgca 54 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggattttttct 51 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence Length = 182827 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tattgccttaattattcat 148 ||||||||||||||||||| Sbjct: 27354 tattgccttaattattcat 27336
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tgggcaaaacaagggattt 46 ||||||||||||||||||| Sbjct: 3842397 tgggcaaaacaagggattt 3842415
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ccagctgagctgagcttcc 96 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase (GLP_661_10786_9158) partial mRNA Length = 1629 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 cacaacaatgcattgaccg 73 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3, complete sequence Length = 162642 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 attttttctgcacacaaca 61 ||||||||||||||||||| Sbjct: 61311 attttttctgcacacaaca 61293
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggatttttt 49 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 gcaaaacaagggatttttt 49 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Minus Query: 43 attttttctgcacacaacaatgcattg 69 |||||||| |||||| ||||||||||| Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tgggcaaaacaagggattt 46 ||||||||||||||||||| Sbjct: 121021 tgggcaaaacaagggattt 121039
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 catcacaccatcgacttcattat 27 |||||||||||||| |||||||| Sbjct: 22022485 catcacaccatcgaattcattat 22022463
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 agctgagctgagcttccgc 98 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tgggcaaaacaagggattt 46 ||||||||||||||||||| Sbjct: 3842508 tgggcaaaacaagggattt 3842526
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tgggcaaaacaagggattt 46 ||||||||||||||||||| Sbjct: 48870 tgggcaaaacaagggattt 48888
>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds Length = 1629 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 cacaacaatgcattgaccg 73 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 agctgagctgagcttccgc 98 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 catcacaccatcgacttcattat 27 |||||||||||||| |||||||| Sbjct: 64549 catcacaccatcgaattcattat 64527
>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full insert sequence Length = 3941 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tgggcaaaacaagggattt 46 ||||||||||||||||||| Sbjct: 1147 tgggcaaaacaagggattt 1165
>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence Length = 228343 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tattgccttaattattcat 148 ||||||||||||||||||| Sbjct: 35076 tattgccttaattattcat 35094
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggatttttt 49 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377
>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B mRNA, complete cds Length = 681 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ccatcgacttcattattgg 30 ||||||||||||||||||| Sbjct: 271 ccatcgacttcattattgg 253
>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A mRNA, complete cds Length = 692 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ccatcgacttcattattgg 30 ||||||||||||||||||| Sbjct: 328 ccatcgacttcattattgg 310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,206,722 Number of Sequences: 3902068 Number of extensions: 1206722 Number of successful extensions: 80413 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80231 Number of HSP's gapped (non-prelim): 181 length of query: 151 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 130 effective length of database: 17,151,101,840 effective search space: 2229643239200 effective search space used: 2229643239200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)