ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20d05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC119820.20| Mus musculus chromosome 1, clone RP23-148M18, complete sequence Length = 183287 Score = 54.0 bits (27), Expect = 3e-05 Identities = 30/31 (96%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 ||||||||||||||||||||||| ||||||| Sbjct: 96038 tactaccactacaacttctactgctactact 96068
>gb|AC158793.4| Mus musculus chromosome 1, clone RP23-269P13, complete sequence Length = 183447 Score = 54.0 bits (27), Expect = 3e-05 Identities = 30/31 (96%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 ||||||||||||||||||||||| ||||||| Sbjct: 170397 tactaccactacaacttctactgctactact 170427
>emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in linkage group 23, complete sequence Length = 203127 Score = 44.1 bits (22), Expect = 0.024 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||||||||||| Sbjct: 112227 tactaccactacaacttctact 112206 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 111196 tactactactacaacttctact 111175
>emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in linkage group 9, complete sequence Length = 192510 Score = 44.1 bits (22), Expect = 0.024 Identities = 34/38 (89%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactactgccacca 41 |||||| ||||| |||||||||||||| ||||| |||| Sbjct: 122704 tactactactactacttctactgttaccactgctacca 122741 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 122845 tactactactaccactactactgttactact 122875
>gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, complete sequence Length = 215308 Score = 42.1 bits (21), Expect = 0.097 Identities = 27/29 (93%) Strand = Plus / Minus Query: 7 taccactacaacttctactgttactactg 35 |||||||| ||||||||||||||||||| Sbjct: 210378 taccactattacttctactgttactactg 210350
>gb|AC069411.21| Homo sapiens 3 BAC RP11-609K13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156733 Score = 42.1 bits (21), Expect = 0.097 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ctactgttactactgccacca 41 ||||||||||||||||||||| Sbjct: 41974 ctactgttactactgccacca 41994
>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence Length = 152529 Score = 42.1 bits (21), Expect = 0.097 Identities = 27/29 (93%) Strand = Plus / Minus Query: 7 taccactacaacttctactgttactactg 35 |||||||| ||||||||||||||||||| Sbjct: 91231 taccactattacttctactgttactactg 91203
>gb|AC108678.3| Homo sapiens 3 BAC RP11-357G12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 56921 Score = 42.1 bits (21), Expect = 0.097 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ctactgttactactgccacca 41 ||||||||||||||||||||| Sbjct: 41216 ctactgttactactgccacca 41236
>emb|AL592077.8| Zebrafish DNA sequence from clone XX-DZ35C18, complete sequence Length = 53352 Score = 42.1 bits (21), Expect = 0.097 Identities = 30/33 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactactgc 36 |||||||||||| ||| |||||| ||||||||| Sbjct: 26824 tactaccactactactactactgctactactgc 26856
>gb|AY814316.1| Schistosoma japonicum SJCHGC05827 protein mRNA, complete cds Length = 1726 Score = 40.1 bits (20), Expect = 0.38 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 cactacaacttctactgttactac 33 |||||| ||||||||||||||||| Sbjct: 1126 cactactacttctactgttactac 1149
>emb|AL356389.20| Human DNA sequence from clone RP11-352P4 on chromosome 1 Contains the 3' end of the gene for maba1 (KIAA1324) and the SARS gene for seryl-tRNA synthetase, complete sequence Length = 97114 Score = 40.1 bits (20), Expect = 0.38 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tactgttactactgccacca 41 |||||||||||||||||||| Sbjct: 31378 tactgttactactgccacca 31359
>emb|BX571974.6| Zebrafish DNA sequence from clone DKEY-29P4 in linkage group 12, complete sequence Length = 267018 Score = 40.1 bits (20), Expect = 0.38 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttact 31 |||||||||||||||| ||||| ||||| Sbjct: 137776 tactaccactacaactactactattact 137749
>emb|BX321906.30| Zebrafish DNA sequence from clone DKEYP-45E9 in linkage group 10, complete sequence Length = 164266 Score = 40.1 bits (20), Expect = 0.38 Identities = 26/28 (92%) Strand = Plus / Plus Query: 7 taccactacaacttctactgttactact 34 ||||||||||||| |||||| ||||||| Sbjct: 111322 taccactacaactactactgctactact 111349
>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence Length = 193553 Score = 40.1 bits (20), Expect = 0.38 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 tactgttactactgccaccattaa 45 ||||||||||||||||||| |||| Sbjct: 120932 tactgttactactgccacccttaa 120909
>gb|AC008734.7| Homo sapiens chromosome 19 clone CTD-2529P6, complete sequence Length = 183137 Score = 40.1 bits (20), Expect = 0.38 Identities = 32/36 (88%) Strand = Plus / Plus Query: 6 ctaccactacaacttctactgttactactgccacca 41 |||||||| | ||| |||||||||||||| |||||| Sbjct: 153157 ctaccactgctactactactgttactactaccacca 153192
>gb|AC150426.3| Branchiostoma floridae clone CH302-83B17, complete sequence Length = 192173 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||| ||||| |||||||| Sbjct: 97443 tactaccactactactactactattactact 97413
>ref|XM_638885.1| Dictyostelium discoideum Ras guanine nucleotide exchange factor (DDB0191326), partial mRNA Length = 2790 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 1744 tactactactactactactactgttactact 1714
>ref|XM_638822.1| Dictyostelium discoideum hypothetical protein (DDB0220686), partial mRNA Length = 1716 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||| ||||| |||||||| Sbjct: 630 tactaccactactactactactattactact 660
>ref|XM_636370.1| Dictyostelium discoideum hypothetical protein (DDB0205932), partial mRNA Length = 3033 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 742 tactactactactactactactgttactact 712
>gb|AY223552.1| Candida albicans agglutinin-like sequence 3 (ALS3) gene, ALS3-large allele, complete cds Length = 3468 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 cttctactgttactactgc 36 ||||||||||||||||||| Sbjct: 2879 cttctactgttactactgc 2897
>ref|XM_676418.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8241.2), mRNA Length = 2886 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 taccactacaacttctact 25 ||||||||||||||||||| Sbjct: 1071 taccactacaacttctact 1089
>gb|AY160102.1| Dictyostelium discoideum nucleotide exchange factor RasGEF M (gefM) gene, complete cds Length = 6477 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 4105 tactactactactactactactgttactact 4075
>emb|CR759789.8| Zebrafish DNA sequence from clone CH211-153M1, complete sequence Length = 165831 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 6 ctaccactacaacttctactgttactactgc 36 |||| ||||| ||| |||||||||||||||| Sbjct: 110605 ctactactactactactactgttactactgc 110635
>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the CUL4A gene for cullin 4A, the LAMP1 gene for lysosomal-associated membrane protein 1, the GRTP1 gene for growth hormone regulated TBC protein 1, a novel gene, the 5' end of a novel gene (FLJ11305) an LDHB (lactate dehydrogenase B) pseudogene and six CpG islands, complete sequence Length = 188896 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 actgttactactgccacca 41 ||||||||||||||||||| Sbjct: 23809 actgttactactgccacca 23827
>gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosome 12, complete sequence Length = 175716 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 148947 tactactactactactactactgttactact 148917
>emb|CR376765.12| Zebrafish DNA sequence from clone DKEY-208L2 in linkage group 13, complete sequence Length = 134448 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 actactgccaccattaaaa 47 ||||||||||||||||||| Sbjct: 72564 actactgccaccattaaaa 72546
>emb|BX571724.9| Zebrafish DNA sequence from clone CH211-165B19 in linkage group 9, complete sequence Length = 174709 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 12 ctacaacttctactgttactact 34 |||| |||||||||||||||||| Sbjct: 55280 ctactacttctactgttactact 55258
>gb|AF351406.1| Gossypium hirsutum clone JESPR168 microsatellite sequence Length = 291 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||| ||||| |||||||| Sbjct: 44 tactaccactactactactactattactact 14
>gb|AF465306.1| Dictyostelium discoideum ABC transporter ABCA.4 (abca4) gene, complete cds Length = 9098 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||| ||||| |||||||| Sbjct: 6351 tactaccactactactactactattactact 6321
>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14, complete sequence Length = 190254 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||| |||| |||||||||||||| Sbjct: 158316 tactaccacttcaaccactactgttactact 158346
>gb|AC163765.3| Pan troglodytes BAC clone CH251-175G24 from chromosome unknown, complete sequence Length = 196942 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 actgttactactgccacca 41 ||||||||||||||||||| Sbjct: 88663 actgttactactgccacca 88645
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||| ||||| |||||||| Sbjct: 230959 tactaccactactactactactattactact 230929 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 75883 tactactactactactactactgttactact 75913
>gb|AF051313.2|AF051313 Candida albicans agglutinin-like cell surface protein (ALS8) gene, complete cds Length = 4383 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 cttctactgttactactgc 36 ||||||||||||||||||| Sbjct: 3251 cttctactgttactactgc 3269
>gb|AC151756.2| Ornithorhynchus anatinus chromosome UNK clone OABb-466P24, complete sequence Length = 156508 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||||||||||||||||| Sbjct: 25097 tactactactacggcttctactgttactact 25127
>emb|BX005350.6| Zebrafish DNA sequence from clone DKEY-58C8 in linkage group 1, complete sequence Length = 195436 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||||||| ||||| ||||||| Sbjct: 117028 tactaccactacaactactactactactact 116998 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||||||| ||||| ||||||| Sbjct: 116911 tactaccactacaactactactaatactact 116881 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||||||| ||||| ||||||| Sbjct: 116803 tactaccactacaactactactactactact 116773 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||||||| ||||| ||||||| Sbjct: 116761 tactaccactacaactactactaatactact 116731
>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete sequence Length = 97756 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||| ||||| |||||||| Sbjct: 38029 tactaccactactactactactattactact 37999
>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4, complete sequence Length = 200352 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactact 34 |||||||||||| ||||||||| ||||||| Sbjct: 61548 tactaccactactacttctactactactact 61518
>gb|AC156636.2| Mus musculus BAC clone RP24-401F19 from chromosome 12, complete sequence Length = 170370 Score = 38.2 bits (19), Expect = 1.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactact 34 |||||| ||||| ||| |||||||||||||| Sbjct: 167096 tactactactactactactactgttactact 167126
>gb|U87956.1|CAU87956 Candida albicans agglutinin-like protein (ALS3) gene, complete cds Length = 3360 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 cttctactgttactactgc 36 ||||||||||||||||||| Sbjct: 2771 cttctactgttactactgc 2789
>dbj|D87895.1| Aspergillus nidulans chiA gene for chitinase, complete cds Length = 3691 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 taccactacaacttctact 25 ||||||||||||||||||| Sbjct: 1746 taccactacaacttctact 1764
>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence Length = 182866 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 ctgttactactgccacca 41 |||||||||||||||||| Sbjct: 4515 ctgttactactgccacca 4532
>ref|NM_103354.3| Arabidopsis thaliana unknown protein AT1G36990 mRNA, complete cds Length = 2837 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 ttactactgccaccatta 44 |||||||||||||||||| Sbjct: 1274 ttactactgccaccatta 1257
>ref|XM_632140.1| Dictyostelium discoideum hypothetical protein (DDB0187415), partial mRNA Length = 1839 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||| ||||||||| Sbjct: 234 tactaccactaccacttctact 255
>ref|XM_640013.1| Dictyostelium discoideum hypothetical protein (DDB0168842), partial mRNA Length = 2796 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 2205 tactaccactacaactactact 2226
>ref|XM_637186.1| Dictyostelium discoideum hypothetical protein (DDB0218084), partial mRNA Length = 3669 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactac 33 |||||||||||| ||| |||||| |||||| Sbjct: 1627 tactaccactaccactactactgctactac 1598
>gb|AC166933.3| Mus musculus chromosome 5, clone wi1-2074J17, complete sequence Length = 41344 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 ctgttactactgccacca 41 |||||||||||||||||| Sbjct: 38137 ctgttactactgccacca 38154
>gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete sequence Length = 169100 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 26988 tactaccactacaactactact 26967
>gb|AC008356.6| Drosophila melanogaster clone BACR43K14, complete sequence Length = 162593 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 99013 tactaccactacaactactact 98992
>gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, complete sequence Length = 219488 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 5 actaccactacaacttct 22 |||||||||||||||||| Sbjct: 91304 actaccactacaacttct 91321
>gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence Length = 90373 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 28184 tactaccactacaactactact 28163
>emb|BX537295.7| Zebrafish DNA sequence from clone DKEY-21O10 in linkage group 1, complete sequence Length = 165366 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Minus Query: 4 tactaccactacaacttctactgttactac 33 |||||| ||||| ||| ||||||||||||| Sbjct: 160004 tactactactactactactactgttactac 159975
>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete sequence Length = 242558 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||| ||||||||| Sbjct: 234493 tactaccactactacttctact 234514
>ref|XM_660081.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30097) partial mRNA Length = 2199 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 1779 tactaccactacaactactact 1800 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 1761 tactaccactacaactactact 1782 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 1740 tactaccactacaactactact 1761 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 1722 tactaccactacaactactact 1743
>ref|XM_660666.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20329) partial mRNA Length = 4941 Score = 36.2 bits (18), Expect = 6.0 Identities = 33/38 (86%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactactgccacca 41 |||||||||||| ||| ||||| ||||||| |||||| Sbjct: 2589 tactaccactactactactactactactactaccacca 2626
>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence Length = 146386 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Plus Query: 4 tactaccactacaacttctactgttactac 33 |||||| ||||| ||| ||||||||||||| Sbjct: 55290 tactactactactactactactgttactac 55319
>emb|AL731569.18| Human DNA sequence from clone RP11-77P6 on chromosome 10 Contains the 5' end of the gene for friend of EBNA2 (FOE) (KIAA0261) and two CpG islands, complete sequence Length = 133348 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 gttactactgccaccattaaaa 47 ||||||||| |||||||||||| Sbjct: 420 gttactactaccaccattaaaa 441
>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the 5' end of the GRID1 gene for glutamate receptor (ionotropic) delta 1, the 3' end of the gene for friend of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete sequence Length = 167780 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 gttactactgccaccattaaaa 47 ||||||||| |||||||||||| Sbjct: 166200 gttactactaccaccattaaaa 166221
>emb|CR392045.5| Zebrafish DNA sequence from clone DKEY-167C9 in linkage group 3, complete sequence Length = 152453 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||| ||||||||| Sbjct: 97158 tactaccactactacttctact 97179
>gb|AY091259.1| Arabidopsis thaliana unknown protein (At1g36990) mRNA, complete cds Length = 1777 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 ttactactgccaccatta 44 |||||||||||||||||| Sbjct: 485 ttactactgccaccatta 468
>gb|AY063909.1| Arabidopsis thaliana unknown protein (At1g36990) mRNA, complete cds Length = 2850 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 ttactactgccaccatta 44 |||||||||||||||||| Sbjct: 1274 ttactactgccaccatta 1257
>gb|AY847308.1| Bovine herpesvirus 4 strain Buf GP80-like protein (Bo10) gene, complete cds Length = 926 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 taccactacaacttctac 24 |||||||||||||||||| Sbjct: 300 taccactacaacttctac 317
>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12, complete sequence Length = 126042 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||| ||||||||| Sbjct: 56561 tactaccactactacttctact 56540
>emb|AL954189.5| Mouse DNA sequence from clone RP23-405M24 on chromosome 4 Contains the 5' end of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 172364 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 10 cactacaacttctactgttact 31 |||||||||||||| ||||||| Sbjct: 2927 cactacaacttctaatgttact 2948
>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17, complete sequence Length = 141987 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 65016 tactaccactacaactactact 64995
>emb|AL627262.8| Zebrafish DNA sequence from clone RP71-1L7 in linkage group 15 Contains part of a novel gene similar to human GRID2 (ionotropic glutamate receptor delta 2) and a CpG island, complete sequence Length = 145079 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 49585 tactaccactacaactactact 49606
>gb|AC023712.5| Drosophila melanogaster X BAC RP98-1M22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170129 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 119671 tactactactacaacttctact 119650
>gb|AC104628.6| Drosophila melanogaster X BAC RP98-18C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187772 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 9683 tactaccactacaactactact 9704
>emb|BX323597.9| Zebrafish DNA sequence from clone CH211-227N13 in linkage group 11, complete sequence Length = 177773 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 13 tacaacttctactgttactact 34 ||||||| |||||||||||||| Sbjct: 112412 tacaactactactgttactact 112433
>emb|BX511029.9| Zebrafish DNA sequence from clone DKEY-18H21 in linkage group 3, complete sequence Length = 151867 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Minus Query: 5 actaccactacaacttctactgttactact 34 ||||| |||||| || |||||||||||||| Sbjct: 142677 actactactacatctactactgttactact 142648
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 acttctactgttactact 34 |||||||||||||||||| Sbjct: 6743 acttctactgttactact 6726
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172284 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 17 acttctactgttactact 34 |||||||||||||||||| Sbjct: 119466 acttctactgttactact 119483
>gb|AC023710.5| Drosophila melanogaster X BAC RP98-19D3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 189976 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 131819 tactaccactacaactactact 131840
>emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in linkage group 2, complete sequence Length = 155396 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Minus Query: 5 actaccactacaacttctactgttactact 34 ||||| ||||||||||||||| ||||||| Sbjct: 121510 actactactacaacttctactactactact 121481
>emb|BX296521.18| Zebrafish DNA sequence from clone CH211-194E11 in linkage group 7, complete sequence Length = 185817 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 ctactgttactactgcca 38 |||||||||||||||||| Sbjct: 145384 ctactgttactactgcca 145367
>emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 in linkage group 1, complete sequence Length = 186493 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 actacaacttctactgttacta 32 ||||||||| |||||||||||| Sbjct: 83283 actacaactactactgttacta 83262
>emb|BX816408.1|CNS0AE16 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZF12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2771 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 ttactactgccaccatta 44 |||||||||||||||||| Sbjct: 1250 ttactactgccaccatta 1233
>gb|AC155907.2| Mus musculus BAC clone RP23-250B18 from chromosome 9, complete sequence Length = 183619 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 cactacaacttctactgt 27 |||||||||||||||||| Sbjct: 101218 cactacaacttctactgt 101201
>gb|AC020646.2|AC020646 Genomic sequence for Arabidopsis thaliana BAC T32E20 from chromosome I, complete sequence Length = 103931 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 ttactactgccaccatta 44 |||||||||||||||||| Sbjct: 76490 ttactactgccaccatta 76473
>emb|AL929064.11| Mouse DNA sequence from clone RP23-442A7 on chromosome 2, complete sequence Length = 121402 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 32225 tactactactacaacttctact 32204
>emb|AL935062.13| Zebrafish DNA sequence from clone CH211-231F23 in linkage group 9, complete sequence Length = 176010 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Minus Query: 5 actaccactacaacttctactgttactact 34 ||||||||||| ||| ||||| |||||||| Sbjct: 80479 actaccactactactactactattactact 80450 Score = 36.2 bits (18), Expect = 6.0 Identities = 27/30 (90%) Strand = Plus / Minus Query: 5 actaccactacaacttctactgttactact 34 ||||||||||| ||| ||||| |||||||| Sbjct: 80098 actaccactactactactactattactact 80069
>emb|BX248326.14| Zebrafish DNA sequence from clone DKEY-260N20 in linkage group 20, complete sequence Length = 182841 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 154858 tactaccactacaactactact 154879
>emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in linkage group 4, complete sequence Length = 115188 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 52051 tactactactacaacttctact 52030 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||| ||||||| Sbjct: 50815 tactaccactacaatttctact 50794 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||||||||||| ||||||| Sbjct: 50719 tactaccactacaatttctact 50698
>emb|BX890573.6| Zebrafish DNA sequence from clone DKEYP-90F5 in linkage group 20, complete sequence Length = 86820 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 74311 tactactactacaacttctact 74290
>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete sequence Length = 306650 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 270884 tactaccactacaactactact 270905
>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete sequence Length = 317354 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 17 acttctactgttactact 34 |||||||||||||||||| Sbjct: 30724 acttctactgttactact 30741
>gb|AE003437.3| Drosophila melanogaster chromosome X, section 21 of 74 of the complete sequence Length = 305376 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 121678 tactaccactacaactactact 121699
>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete sequence Length = 303602 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 280372 tactactactacaacttctact 280351
>emb|AL954677.8| Zebrafish DNA sequence from clone DKEY-13J14 in linkage group 8, complete sequence Length = 186836 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||||||||||||| ||||| Sbjct: 10203 tactaccactacaactactact 10224
>emb|CR391931.7| Zebrafish DNA sequence from clone DKEY-267P8 in linkage group 23, complete sequence Length = 136484 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 88599 tactactactacaacttctact 88620 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 81244 tactactactacaacttctact 81223
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 ccactacaacttctactg 26 |||||||||||||||||| Sbjct: 3121360 ccactacaacttctactg 3121343
>gb|AC153541.4| Mus musculus 10 BAC RP23-80P5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222655 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 tactaccactacaacttctact 25 |||||| ||||||||||||||| Sbjct: 152065 tactactactacaacttctact 152044 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 270,854 Number of Sequences: 3902068 Number of extensions: 270854 Number of successful extensions: 73853 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73579 Number of HSP's gapped (non-prelim): 271 length of query: 47 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 27 effective length of database: 17,155,003,908 effective search space: 463185105516 effective search space used: 463185105516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
