Clone Name | rbastl20c12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence Length = 221903 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 290 atcctattccagcttctccatc 311 |||||||||||||||||||||| Sbjct: 42307 atcctattccagcttctccatc 42328 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 atcctattccagcttctccatc 238 |||||||||||||||||||||| Sbjct: 42307 atcctattccagcttctccatc 42328
>gb|AC104542.10| Mus musculus chromosome 1, clone RP23-165D11, complete sequence Length = 211537 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 cagcttctccatctgtcaaat 319 ||||||||||||||||||||| Sbjct: 206122 cagcttctccatctgtcaaat 206102 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 cagcttctccatctgtcaaat 246 ||||||||||||||||||||| Sbjct: 206122 cagcttctccatctgtcaaat 206102
>gb|AC004682.1|HUAC004682 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-259H10, complete sequence Length = 189134 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tattattggtaaaagtgtaaa 27 ||||||||||||||||||||| Sbjct: 97446 tattattggtaaaagtgtaaa 97426
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 169 tagttacagttccatatgaccctggtgcggattctgcttcc 209 |||||||||||||||||| || || ||| ||||||||||| Sbjct: 107524 tagttacagttccatatggccttgccgcgaattctgcttcc 107564 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 4 aactattattggtaaaagtgtaaatgatcagtgatac 40 |||| |||||||||||||||| |||||| || ||||| Sbjct: 107387 aactgttattggtaaaagtgtgaatgatgagcgatac 107423
>gb|AY817668.1| Homo sapiens arsenic (+3 oxidation state) methyltransferase (AS3MT) gene, complete cds Length = 38888 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tctccatctgtcaaatgaag 250 |||||||||||||||||||| Sbjct: 34294 tctccatctgtcaaatgaag 34275 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tctccatctgtcaaatgaag 323 |||||||||||||||||||| Sbjct: 34294 tctccatctgtcaaatgaag 34275
>gb|AC157211.7| Mus musculus chromosome 1, clone RP23-204C6, complete sequence Length = 206840 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ttctccatctgtcaaatgaa 249 |||||||||||||||||||| Sbjct: 139356 ttctccatctgtcaaatgaa 139337 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ttctccatctgtcaaatgaa 322 |||||||||||||||||||| Sbjct: 139356 ttctccatctgtcaaatgaa 139337
>gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, complete sequence Length = 239061 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ggtgtccatacaaggatctc 60 |||||||||||||||||||| Sbjct: 211105 ggtgtccatacaaggatctc 211124
>emb|Z98255.2|HS279N11 Human DNA sequence from clone RP1-279N11 on chromosome Xq11.2-13.3 Contain the 3' end of a novel gene, complete sequence Length = 169998 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 tccatctgtcaaatgaagtt 252 |||||||||||||||||||| Sbjct: 9226 tccatctgtcaaatgaagtt 9245 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tccatctgtcaaatgaagtt 325 |||||||||||||||||||| Sbjct: 9226 tccatctgtcaaatgaagtt 9245
>emb|AL358790.22| Human DNA sequence from clone RP11-753C18 on chromosome 10 Contains three novel genes, the CYP17A1 gene for cytochrome P450 17A1, a profilin 1 (PFN1) pseudogene, the gene for methyltransferase cyt19, an unactive progesterone receptor 23 kD (TEBP) pseudogene, a ribosomal protein L22 (RPL22) pseudogene and a CpG island, complete sequence Length = 131753 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tctccatctgtcaaatgaag 250 |||||||||||||||||||| Sbjct: 125852 tctccatctgtcaaatgaag 125833 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tctccatctgtcaaatgaag 323 |||||||||||||||||||| Sbjct: 125852 tctccatctgtcaaatgaag 125833
>gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence Length = 173758 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tctccatctgtcaaatgaag 250 |||||||||||||||||||| Sbjct: 109885 tctccatctgtcaaatgaag 109866 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tctccatctgtcaaatgaag 323 |||||||||||||||||||| Sbjct: 109885 tctccatctgtcaaatgaag 109866
>gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence Length = 161264 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gcttctccatctgtcaaatg 247 |||||||||||||||||||| Sbjct: 104715 gcttctccatctgtcaaatg 104696 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcttctccatctgtcaaatg 320 |||||||||||||||||||| Sbjct: 104715 gcttctccatctgtcaaatg 104696 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,886,796 Number of Sequences: 3902068 Number of extensions: 3886796 Number of successful extensions: 67711 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67679 Number of HSP's gapped (non-prelim): 32 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)