ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
2dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AK070898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
4dbj|AK059642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5gb|AC147076.3| Pan troglodytes BAC clone RP43-172O18 from 7, com... 42 1.2
6gb|AC146376.4| Pan troglodytes BAC clone RP43-76K24 from 7, comp... 42 1.2
7gb|AC146221.3| Pan troglodytes BAC clone RP43-33B24 from 7, comp... 42 1.2
8gb|AC009333.12| Homo sapiens chromosome 7 clone RP11-356G1, comp... 42 1.2
9gb|AC016778.3|AC016778 Homo sapiens BAC clone CTD-3055C21 from 7... 42 1.2
10gb|AC007652.1|AC007652 Homo sapiens clone RP11-23B6 from 7p14-15... 42 1.2
11gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, co... 40 4.6
12ref|XM_808578.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 4.6
13gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome ... 40 4.6
14gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, comp... 40 4.6
15gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, com... 40 4.6
16gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, com... 40 4.6
17gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, comple... 40 4.6 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 300      ggtgaagagaaacacctctggcactgaataaggatcgagctc 341
                |||||| ||||||| ||||||||||||  |||||||||||||
Sbjct: 19687761 ggtgaaaagaaacatctctggcactgacaaaggatcgagctc 19687802
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>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0001B21
          Length = 143722

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 300   ggtgaagagaaacacctctggcactgaataaggatcgagctc 341
             |||||| ||||||| ||||||||||||  |||||||||||||
Sbjct: 72217 ggtgaaaagaaacatctctggcactgacaaaggatcgagctc 72258
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>dbj|AK070898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071K08, full
            insert sequence
          Length = 4268

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 300  ggtgaagagaaacacctctggcactgaataaggatcgagctc 341
            |||||| ||||||| ||||||||||||  |||||||||||||
Sbjct: 3789 ggtgaaaagaaacatctctggcactgacaaaggatcgagctc 3748
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>dbj|AK059642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B09, full
            insert sequence
          Length = 1518

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 300  ggtgaagagaaacacctctggcactgaataaggatcgagctc 341
            |||||| ||||||| ||||||||||||  |||||||||||||
Sbjct: 1094 ggtgaaaagaaacatctctggcactgacaaaggatcgagctc 1053
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>gb|AC147076.3| Pan troglodytes BAC clone RP43-172O18 from 7, complete sequence
          Length = 175186

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 6    tacacaagcaggaaatgaagg 26
            |||||||||||||||||||||
Sbjct: 9315 tacacaagcaggaaatgaagg 9335
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>gb|AC146376.4| Pan troglodytes BAC clone RP43-76K24 from 7, complete sequence
          Length = 173021

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tacacaagcaggaaatgaagg 26
             |||||||||||||||||||||
Sbjct: 26448 tacacaagcaggaaatgaagg 26428
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>gb|AC146221.3| Pan troglodytes BAC clone RP43-33B24 from 7, complete sequence
          Length = 127675

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tacacaagcaggaaatgaagg 26
             |||||||||||||||||||||
Sbjct: 26451 tacacaagcaggaaatgaagg 26431
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>gb|AC009333.12| Homo sapiens chromosome 7 clone RP11-356G1, complete sequence
          Length = 180019

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 6    tacacaagcaggaaatgaagg 26
            |||||||||||||||||||||
Sbjct: 9291 tacacaagcaggaaatgaagg 9311
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>gb|AC016778.3|AC016778 Homo sapiens BAC clone CTD-3055C21 from 7p15.1-p13, complete sequence
          Length = 140100

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tacacaagcaggaaatgaagg 26
             |||||||||||||||||||||
Sbjct: 62714 tacacaagcaggaaatgaagg 62694
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>gb|AC007652.1|AC007652 Homo sapiens clone RP11-23B6 from 7p14-15, complete sequence
          Length = 195981

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     tacacaagcaggaaatgaagg 26
             |||||||||||||||||||||
Sbjct: 90314 tacacaagcaggaaatgaagg 90334
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>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence
          Length = 278715

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    caacttcagctcctaaagatgcac 271
              ||||||||||||||||||| ||||
Sbjct: 239146 caacttcagctcctaaagaagcac 239123
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>ref|XM_808578.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506251.30) partial mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 246  cacaacttcagctcctaaagatgc 269
            |||||||||||||||| |||||||
Sbjct: 1103 cacaacttcagctcctcaagatgc 1080
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>gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome 14, complete sequence
          Length = 244524

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    ttcagctcctaaagatgcac 271
              ||||||||||||||||||||
Sbjct: 202335 ttcagctcctaaagatgcac 202354
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>gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, complete sequence
          Length = 114475

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tacacaagcaggaaatgaag 25
             ||||||||||||||||||||
Sbjct: 71091 tacacaagcaggaaatgaag 71110
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>gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, complete sequence
          Length = 179186

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 284   tatcccacatttaactggtgaaga 307
             ||||||||||||||||| ||||||
Sbjct: 44170 tatcccacatttaactgatgaaga 44147
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>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence
          Length = 188634

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 284    tatcccacatttaactggtgaaga 307
              ||||||||||||||||| ||||||
Sbjct: 126767 tatcccacatttaactgatgaaga 126744
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>gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, complete sequence
          Length = 189215

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    agcaggaaatgaagggggga 31
             ||||||||||||||||||||
Sbjct: 27926 agcaggaaatgaagggggga 27907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,508,847
Number of Sequences: 3902068
Number of extensions: 2508847
Number of successful extensions: 46507
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46454
Number of HSP's gapped (non-prelim): 53
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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