>DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)|
          Length = 1097

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 374  PTWELTFEPETDTCKRRTIKALQ 306
            PTWEL F+PET   +R  +KALQ
Sbjct: 1075 PTWELRFDPETALWRRNILKALQ 1097

>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 118 QLSTGNEIPMSSIELHYILVPTLTLAHRHRQHFKVPRLSMLG 243
           +L  G+EI +S++E H  L+P   LAHR   H  V  L   G
Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRRNLHLVVLPLDAHG 147

>PNS1_NEUCR (Q870V7) Protein PNS1|
          Length = 554

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 127 WIIGLRGVSFLYLFHIFLLSCRSNKPFSDFALVSTIFPQKV 5
           W  G+  + F+ L  +F  SCRS  PFS   L + I   KV
Sbjct: 207 WSGGIVFLIFVVLQALFFWSCRSRIPFSTLMLQTAIDVSKV 247

>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 307 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 224
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113

>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 307 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 224
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113

>MFD_BUCAI (P57381) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)|
           (ATP-dependent helicase mfd)
          Length = 812

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
 Frame = +1

Query: 85  EIGTEKTHPAVQLSTGNEIPMSSIELHYILVPTLTLAHRHRQHFK---------VPRLSM 237
           ++G  KT  A++ S    + +S+ +   ILVPT  LA +H ++FK         +  LS 
Sbjct: 294 DVGFGKTEIAMRASF---LAVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVNINILSR 350

Query: 238 LGLPKEGPL--KISQQGRIN 291
               KE  L  K ++ GRIN
Sbjct: 351 FQTQKEQDLIFKHTKNGRIN 370

>RCNA_ECO57 (Q8X3U5) Nickel/cobalt efflux system rcnA|
          Length = 283

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 307 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 224
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,753,390
Number of Sequences: 219361
Number of extensions: 969121
Number of successful extensions: 2146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)