ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full... 476 e-131
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 157 3e-35
3gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 157 3e-35
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
5dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
6dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
7dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
8dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
9gb|AY109428.1| Zea mays CL501_1 mRNA sequence 135 1e-28
10gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, comple... 44 0.30
11emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 42 1.2
12emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BA... 42 1.2
13ref|NM_202601.1| Arabidopsis thaliana unknown protein AT3G17860 ... 40 4.7
14ref|NM_112667.2| Arabidopsis thaliana unknown protein AT3G17860 ... 40 4.7
15gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, co... 40 4.7
16gb|AC145791.2| Xenopus tropicalis clone CH216-136M10, complete s... 40 4.7
17gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome... 40 4.7
18gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosom... 40 4.7
19gb|AC002487.1| Homo sapiens BAC clone CTA-369K23 from 7, complet... 40 4.7
20emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 i... 40 4.7
21emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G1... 40 4.7
22gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integr... 40 4.7
23gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 gen... 40 4.7
24emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 ... 40 4.7
25gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct... 40 4.7
26gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, com... 40 4.7
27dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 4.7
28dbj|AK135406.1| Mus musculus 12 days embryo female mullerian duc... 40 4.7
29dbj|AK222169.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 4.7
30gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome... 40 4.7
31gb|AF372907.1|AF372907 Arabidopsis thaliana AT3g17860/MEB5_8 mRN... 40 4.7
32gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-... 40 4.7
33tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gen... 40 4.7
34dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
35emb|BX822774.1|CNS0A63D Arabidopsis thaliana Full-length cDNA Co... 40 4.7
36emb|BX822297.1|CNS0A611 Arabidopsis thaliana Full-length cDNA Co... 40 4.7
37emb|BX824913.1|CNS0A5NW Arabidopsis thaliana Full-length cDNA Co... 40 4.7
38emb|BX824776.1|CNS0A5NG Arabidopsis thaliana Full-length cDNA Co... 40 4.7
39emb|BX822695.1|CNS0A5WD Arabidopsis thaliana Full-length cDNA Co... 40 4.7
40emb|BX824527.1|CNS0A4QA Arabidopsis thaliana Full-length cDNA Co... 40 4.7
41gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, comple... 40 4.7
42gb|AY085082.1| Arabidopsis thaliana clone 12707 mRNA, complete s... 40 4.7
43emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chro... 40 4.7
44gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, co... 40 4.7
45dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.7
46dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
47emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 i... 40 4.7
48emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5... 40 4.7
49dbj|AP003530.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.7
50gb|AC104225.18| Mus musculus chromosome 15, clone RP23-74H8, com... 40 4.7
51gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence 40 4.7
52emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in... 40 4.7
53gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 4.7
54gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
55emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chrom... 40 4.7
56dbj|AP003181.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.7

>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA
           sequence
          Length = 774

 Score =  476 bits (240), Expect = e-131
 Identities = 330/359 (91%), Gaps = 2/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacaataca 60
           ||||||||||||||| ||||||||||| |  ||  ||| | |||||||||||||||||||
Sbjct: 633 ccaagaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaataca 574

                                                                       
Query: 61  attcacactaacttccatgaaacagcacagctgt--atgctcataactgaataattttga 118
           ||||||||||||||||||| ||||||||  ||||  ||||||||||| ||||||||||||
Sbjct: 573 attcacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataattttga 514

                                                                       
Query: 119 cggaatatccatccttaagttacccgtcacttacttgataagagactccatagcttcaaa 178
           ||||||| | ||| | ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 513 cggaataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttcaaa 454

                                                                       
Query: 179 gaatagaggcacaaactccctgtttggagtcttcactgcacactttgcaccaggagcacc 238
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct: 453 gaatagaggcacaaactccctgtttggagtcttgactgcacacttggcaccaggaacacc 394

                                                                       
Query: 239 aacggcagcagtaagctctatcaggaatggaatcccacgggggatcttcgcagacagata 298
           ||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 393 aacagcagcagtaagctctatcagaaatggaatcccacgggggaccttcgcagacagata 334

                                                                      
Query: 299 cagcacatccatatttgcatttctcctcttggcaataaagaacacatttgatgctgcaa 357
           |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 333 cagcacatccatgtttgcatttttccgcttggcaataaagaacacatttgatgctgcaa 275



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  157 bits (79), Expect = 3e-35
 Identities = 175/207 (84%)
 Strand = Plus / Plus

                                                                            
Query: 151      acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 210
                |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13561611

                                                                            
Query: 211      tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 270
                | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 13561612 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13561671

                                                                            
Query: 271      tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 330
                | ||||| || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||
Sbjct: 13561672 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 13561731

                                           
Query: 331      caataaagaacacatttgatgctgcaa 357
                | |||||||||||||||||||||||||
Sbjct: 13561732 cgataaagaacacatttgatgctgcaa 13561758



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>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score =  157 bits (79), Expect = 3e-35
 Identities = 175/207 (84%)
 Strand = Plus / Plus

                                                                          
Query: 151    acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 210
              |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 121502

                                                                          
Query: 211    tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 270
              | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 121503 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 121562

                                                                          
Query: 271    tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 330
              | ||||| || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||
Sbjct: 121563 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 121622

                                         
Query: 331    caataaagaacacatttgatgctgcaa 357
              | |||||||||||||||||||||||||
Sbjct: 121623 cgataaagaacacatttgatgctgcaa 121649



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  157 bits (79), Expect = 3e-35
 Identities = 175/207 (84%)
 Strand = Plus / Plus

                                                                            
Query: 151      acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 210
                |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13557486

                                                                            
Query: 211      tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 270
                | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 13557487 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13557546

                                                                            
Query: 271      tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 330
                | ||||| || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||
Sbjct: 13557547 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 13557606

                                           
Query: 331      caataaagaacacatttgatgctgcaa 357
                | |||||||||||||||||||||||||
Sbjct: 13557607 cgataaagaacacatttgatgctgcaa 13557633



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>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full
            insert sequence
          Length = 1904

 Score =  157 bits (79), Expect = 3e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                        
Query: 151  acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 210
            |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1669

                                                                        
Query: 211  tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 270
            | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 1668 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1609

                                                                        
Query: 271  tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 330
            | ||||| || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||
Sbjct: 1608 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 1549

                                       
Query: 331  caataaagaacacatttgatgctgcaa 357
            | |||||||||||||||||||||||||
Sbjct: 1548 cgataaagaacacatttgatgctgcaa 1522



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>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full
            insert sequence
          Length = 1842

 Score =  157 bits (79), Expect = 3e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                        
Query: 151  acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 210
            |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1420

                                                                        
Query: 211  tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 270
            | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 1419 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1360

                                                                        
Query: 271  tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 330
            | ||||| || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||
Sbjct: 1359 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 1300

                                       
Query: 331  caataaagaacacatttgatgctgcaa 357
            | |||||||||||||||||||||||||
Sbjct: 1299 cgataaagaacacatttgatgctgcaa 1273



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>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full
           insert sequence
          Length = 834

 Score =  157 bits (79), Expect = 3e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                       
Query: 151 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 210
           |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 546 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 487

                                                                       
Query: 211 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 270
           | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 486 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 427

                                                                       
Query: 271 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 330
           | ||||| || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||
Sbjct: 426 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 367

                                      
Query: 331 caataaagaacacatttgatgctgcaa 357
           | |||||||||||||||||||||||||
Sbjct: 366 cgataaagaacacatttgatgctgcaa 340



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>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full
            insert sequence
          Length = 2979

 Score =  151 bits (76), Expect = 2e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 158  aagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgc 217
            |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| || || ||
Sbjct: 2706 aagagactccatggcttcgaagaagagagccaccatctccttgtttggagttttgaccgc 2647

                                                                        
Query: 218  acactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacg 277
            ||||||  | |||||| |||| || ||||||||||||||||||||||| || || |||||
Sbjct: 2646 acacttcacgccaggaacaccgactgcagcagtaagctctatcaggaaggggattccacg 2587

                                                                        
Query: 278  ggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttggcaataaa 337
             || ||||| |||||||  ||||| |||||| | ||||  ||| |||||||||| |||||
Sbjct: 2586 cggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttggcgataaa 2527

                                
Query: 338  gaacacatttgatgctgcaa 357
            ||||||||||||||||||||
Sbjct: 2526 gaacacatttgatgctgcaa 2507



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>gb|AY109428.1| Zea mays CL501_1 mRNA sequence
          Length = 3187

 Score =  135 bits (68), Expect = 1e-28
 Identities = 162/195 (83%)
 Strand = Plus / Plus

                                                                       
Query: 159 agagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgca 218
           |||| |||||||||||||||||| ||||| || | |||||| ||||| || || ||||||
Sbjct: 356 agagcctccatagcttcaaagaagagaggaaccatctccctatttggtgttttgactgca 415

                                                                       
Query: 219 cactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacgg 278
           |||||  |||||||| ||||||| ||||| |||| |||||| ||||| || || ||||||
Sbjct: 416 cacttcacaccaggaacaccaaccgcagctgtaacctctataaggaaggggattccacgg 475

                                                                       
Query: 279 gggatcttcgcagacagatacagcacatccatatttgcatttctcctcttggcaataaag 338
           || |||||||| || |||||||| |||||||| || |||     || |||||| || |||
Sbjct: 476 ggcatcttcgcggagagatacagaacatccatgttcgcannnnnccgcttggctatgaag 535

                          
Query: 339 aacacatttgatgct 353
           |||||||||||||||
Sbjct: 536 aacacatttgatgct 550



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>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence
          Length = 95280

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 98    ctcataactgaataattttgac 119
             ||||||||||||||||||||||
Sbjct: 57533 ctcataactgaataattttgac 57512



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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 45     ataacaacacaatacaattca 65
              |||||||||||||||||||||
Sbjct: 188407 ataacaacacaatacaattca 188427



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>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project)
          Length = 89219

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    ataacaacacaatacaattca 65
             |||||||||||||||||||||
Sbjct: 45130 ataacaacacaatacaattca 45150



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>ref|NM_202601.1| Arabidopsis thaliana unknown protein AT3G17860 transcript variant
            AT3G17860.2 mRNA, complete cds
          Length = 1370

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1087 cacatccatatttgcatttc 1106



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>ref|NM_112667.2| Arabidopsis thaliana unknown protein AT3G17860 transcript variant
            AT3G17860.1 mRNA, complete cds
          Length = 1580

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1297 cacatccatatttgcatttc 1316



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>gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, complete sequence
          Length = 203772

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 tttgcatttctcctcttggc 331
           ||||||||||||||||||||
Sbjct: 793 tttgcatttctcctcttggc 774



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>gb|AC145791.2| Xenopus tropicalis clone CH216-136M10, complete sequence
          Length = 138176

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    cagcacatccatatttgcat 318
              ||||||||||||||||||||
Sbjct: 116229 cagcacatccatatttgcat 116248



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>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence
          Length = 232320

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aataacaacacaatacaatt 63
              ||||||||||||||||||||
Sbjct: 151220 aataacaacacaatacaatt 151239



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>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence
          Length = 208462

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aataacaacacaatacaatt 63
              ||||||||||||||||||||
Sbjct: 196667 aataacaacacaatacaatt 196648



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>gb|AC002487.1| Homo sapiens BAC clone CTA-369K23 from 7, complete sequence
          Length = 181588

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 298    acagcacatccatatttgcatttc 321
              ||||||||| ||||||||||||||
Sbjct: 135647 acagcacatacatatttgcatttc 135624



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>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7,
             complete sequence
          Length = 168455

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tagaagtaacacaataacaa 51
             ||||||||||||||||||||
Sbjct: 80485 tagaagtaacacaataacaa 80504



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>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    aagtaacacaataacaacacaata 58
             |||||||||||||| |||||||||
Sbjct: 22962 aagtaacacaataataacacaata 22939



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>gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integration site
          Length = 1655

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 44 aataacaacacaatacaatt 63
          ||||||||||||||||||||
Sbjct: 52 aataacaacacaatacaatt 71



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>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete
              sequence
          Length = 149978

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 151    acttgataagagactccatagcttcaaagaatagag 186
              |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662



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>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16,
              complete sequence
          Length = 165294

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     gtaaagtagaagtaacacaa 45
              ||||||||||||||||||||
Sbjct: 116674 gtaaagtagaagtaacacaa 116693



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>gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct7-295g23, complete
             sequence
          Length = 115747

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ttccatgaaacagcacagct 92
             ||||||||||||||||||||
Sbjct: 33060 ttccatgaaacagcacagct 33041



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>gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, complete sequence
          Length = 201182

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    cctcttggcaataaagaaca 342
              ||||||||||||||||||||
Sbjct: 169002 cctcttggcaataaagaaca 168983



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>dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230028P05 product:unclassifiable, full
           insert sequence
          Length = 1057

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  ttccatgaaacagcacagct 92
           ||||||||||||||||||||
Sbjct: 543 ttccatgaaacagcacagct 562



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>dbj|AK135406.1| Mus musculus 12 days embryo female mullerian duct includes
           surrounding region cDNA, RIKEN full-length enriched
           library, clone:6820415M06 product:Rap guanine nucleotide
           exchange factor (GEF) 3, full insert sequence
          Length = 3684

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 tttgcatttctcctcttggc 331
           ||||||||||||||||||||
Sbjct: 630 tttgcatttctcctcttggc 611



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>dbj|AK222169.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL23-30-L21
          Length = 1307

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1016 cacatccatatttgcatttc 1035



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>gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome 14, complete sequence
          Length = 215658

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    acaataacaacacaatacaattca 65
             |||||||||||| |||||||||||
Sbjct: 47726 acaataacaacaaaatacaattca 47749



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>gb|AF372907.1|AF372907 Arabidopsis thaliana AT3g17860/MEB5_8 mRNA, complete cds
          Length = 1578

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1297 cacatccatatttgcatttc 1316



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>gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-B, complete
           sequence
          Length = 5471

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aacacaataacaacacaata 58
           ||||||||||||||||||||
Sbjct: 797 aacacaataacaacacaata 778



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aacacaataacaacacaata 58
           ||||||||||||||||||||
Sbjct: 752 aacacaataacaacacaata 733



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>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds;
             alternatively spliced
          Length = 34001

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atgctcataactgaataatt 114
             ||||||||||||||||||||
Sbjct: 22591 atgctcataactgaataatt 22610



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 151      acttgataagagactccatagcttcaaagaatagag 186
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563



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>emb|BX822774.1|CNS0A63D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB63ZE05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 976

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 cacatccatatttgcatttc 321
           ||||||||||||||||||||
Sbjct: 812 cacatccatatttgcatttc 831



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>emb|BX822297.1|CNS0A611 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB27ZB09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1436

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1193 cacatccatatttgcatttc 1212



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>emb|BX824913.1|CNS0A5NW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH82ZB08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1327

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1087 cacatccatatttgcatttc 1106



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>emb|BX824776.1|CNS0A5NG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH71ZB02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1454

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1228 cacatccatatttgcatttc 1247



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>emb|BX822695.1|CNS0A5WD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB58ZG10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1475

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1226 cacatccatatttgcatttc 1245



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>emb|BX824527.1|CNS0A4QA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH54ZC12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1492

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1238 cacatccatatttgcatttc 1257



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>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence
          Length = 118195

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atgctcataactgaataatt 114
             ||||||||||||||||||||
Sbjct: 13587 atgctcataactgaataatt 13606



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>gb|AY085082.1| Arabidopsis thaliana clone 12707 mRNA, complete sequence
          Length = 1535

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  cacatccatatttgcatttc 321
            ||||||||||||||||||||
Sbjct: 1255 cacatccatatttgcatttc 1274



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>emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chromosome 2, complete
             sequence
          Length = 213629

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ttccatgaaacagcacagct 92
             ||||||||||||||||||||
Sbjct: 57543 ttccatgaaacagcacagct 57524



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>gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, complete sequence
          Length = 232529

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    agaggcacaaactccctgtt 202
              ||||||||||||||||||||
Sbjct: 146507 agaggcacaaactccctgtt 146488



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>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5
          Length = 74968

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   cacatccatatttgcatttc 321
             ||||||||||||||||||||
Sbjct: 33282 cacatccatatttgcatttc 33301



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>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full
           insert sequence
          Length = 575

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 151 acttgataagagactccatagcttcaaagaatagag 186
           |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364



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>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20,
              complete sequence
          Length = 158302

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     acaataacaacacaatacaa 61
              ||||||||||||||||||||
Sbjct: 126271 acaataacaacacaatacaa 126290



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>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tagaggcacaaactccctgt 201
             ||||||||||||||||||||
Sbjct: 98529 tagaggcacaaactccctgt 98548



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>dbj|AP003530.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-514H18, complete
             sequence
          Length = 205804

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   tatttgcatttctcctcttg 329
             ||||||||||||||||||||
Sbjct: 13697 tatttgcatttctcctcttg 13716



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>gb|AC104225.18| Mus musculus chromosome 15, clone RP23-74H8, complete sequence
          Length = 246325

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   tttgcatttctcctcttggc 331
             ||||||||||||||||||||
Sbjct: 23035 tttgcatttctcctcttggc 23054



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>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence
          Length = 122469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cacactttgcaccaggagca 236
             ||||||||||||||||||||
Sbjct: 47122 cacactttgcaccaggagca 47103



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>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16,
             complete sequence
          Length = 184760

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    gtaaagtagaagtaacacaa 45
             ||||||||||||||||||||
Sbjct: 47402 gtaaagtagaagtaacacaa 47383



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    gtaaagtagaagtaacacaa 45
             ||||||||||||||||||||
Sbjct: 46938 gtaaagtagaagtaacacaa 46919



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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 303     acatccatatttgcatttct 322
               ||||||||||||||||||||
Sbjct: 1359986 acatccatatttgcatttct 1360005



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 151      acttgataagagactccatagcttcaaagaatagag 186
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804



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>emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chromosome 2, complete
             sequence
          Length = 233417

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ttccatgaaacagcacagct 92
             ||||||||||||||||||||
Sbjct: 85626 ttccatgaaacagcacagct 85645



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>dbj|AP003181.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-94P11, complete
             sequence
          Length = 165611

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   tatttgcatttctcctcttg 329
             ||||||||||||||||||||
Sbjct: 74368 tatttgcatttctcctcttg 74387


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,487,704
Number of Sequences: 3902068
Number of extensions: 3487704
Number of successful extensions: 67475
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67296
Number of HSP's gapped (non-prelim): 177
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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