ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20c07 |
|---|---|
| Clone Library Name | barley_pub |
>CDK7_MOUSE (Q03147) Cell division protein kinase 7 (EC 2.7.11.22) (EC| 2.7.11.23) (CDK-activating kinase) (CAK) (TFIIH basal transcription factor complex kinase subunit) (39 kDa protein kinase) (P39 Mo15) (Protein-tyrosine kinase MPK-7) (CR4 protein kinas Length = 346 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +1 Query: 100 EDLFKMNTCFITT------TKLPPSRPAPTPGMEMP 189 + LF N C TT TK +RP PTPG ++P Sbjct: 273 QGLFLFNPCTRTTASQALKTKYFSNRPGPTPGCQLP 308
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +3 Query: 105 FVQNEHMFHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 242 F+ F N TP K C ARH S G +RP ++ TLD Sbjct: 329 FLPANFSFKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -3 Query: 298 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 179 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -3 Query: 331 WQELRNRRARPHTLFDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQ 161 +++ R R FD D A+ + V PWT V C G M+ I + + LA A Sbjct: 906 YEQTRRCTLRGMLDFDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAM 965 Query: 160 VDLGG 146 LGG Sbjct: 966 NRLGG 970
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 28.1 bits (61), Expect = 5.5 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = +1 Query: 4 RLKKILEIATSSNMFL-AQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGM 180 RL ++ IA N AQ+N +T T T +TT PP+ APTP Sbjct: 3455 RLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPT--APTPVT 3512 Query: 181 EMPAL 195 PAL Sbjct: 3513 SAPAL 3517
>XTH32_ARATH (Q9SJL9) Probable xyloglucan endotransglucosylase/hydrolase protein| 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) Length = 299 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -2 Query: 308 SAATYPFRPRWRHGSLVSAT 249 SA+T+P RP W +GS+ A+ Sbjct: 193 SASTFPLRPMWLYGSIWDAS 212
>INX10_CAEEL (Q22549) Innexin-10| Length = 559 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +3 Query: 9 KKNTRNCYQFKYVFSTKQCTPGSTNLIHHN*RFVQNEHMFHNHNQTPPKSTCAHAR 176 K+N +N Q Y ++ + TP + N +QN++ + N+ +TP S +R Sbjct: 490 KQNQQNATQPPYCYTNQNPTP------YQNQNQIQNQNQYSNYYRTPSLSRGTDSR 539
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 365 HGGILPYVIRNMAGAQK 315 HGGIL YV+R MA + K Sbjct: 923 HGGILQYVLRQMAASSK 939
>VL2_HPV31 (P17389) Minor capsid protein L2| Length = 466 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +1 Query: 31 TSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALFSVYS 210 TS ++ L+ S++ ST + M+T ++T + P PG+ PA +YS Sbjct: 172 TSGHLLLSSSSI-------STHNYEEIPMDTFIVSTNNENITSSTPIPGVRRPARLGLYS 224
>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 19 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 147 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 19 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 147 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>NUKM_BRAOL (P42027) NADH-ubiquinone oxidoreductase 20 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD) Length = 215 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +1 Query: 19 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALF 198 L + S+ A S++H +LP S T T T PPS AP PG+ A F Sbjct: 12 LPLVLQSHRAAAVSHLHTSLPALSPAT-------TPTSYTRPGPPSTSAPPPGLSKTAEF 64 Query: 199 SV 204 + Sbjct: 65 VI 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,398,637 Number of Sequences: 219361 Number of extensions: 1288037 Number of successful extensions: 3468 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3464 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
