ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506161.1| PREDICTED Oryza sativa (japonica cultivar-group... 96 1e-16
2ref|XM_476621.1| Oryza sativa (japonica cultivar-group), mRNA 96 1e-16
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
5dbj|AK105705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
6dbj|AK102834.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
7dbj|AK099551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
8gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, com... 46 0.087
9gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, co... 44 0.34
10gb|AC157770.4| Mus musculus chromosome 1, clone RP24-159C20, com... 44 0.34
11ref|XM_630426.1| Dictyostelium discoideum hypothetical protein (... 40 5.3
12gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.3
13gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.3
14gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.3
15gb|AC091839.2| Homo sapiens chromosome 5 clone CTD-2108O9, compl... 40 5.3
16gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, comple... 40 5.3
17emb|CT573500.2| Medicago truncatula chromosome 5 clone mte1-57o1... 40 5.3
18gb|AY880360.1| Gekko japonicus GekBS129P mRNA, complete cds 40 5.3
19gb|U00058.1| Caenorhabditis elegans cosmid W03A5, complete sequence 40 5.3
20emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 5.3 
>ref|XM_506161.1| PREDICTED Oryza sativa (japonica cultivar-group), P0022E03.2 mRNA
          Length = 3539

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 3135 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 3076

                        
Query: 380  atcgaaggccgg 391
            ||||||||||||
Sbjct: 3075 atcgaaggccgg 3064



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 37   actgtaccaaaagaatttcagtatattgtagggac 71
            |||||||||||| ||| |||||| |||||||||||
Sbjct: 3433 actgtaccaaaataatctcagtacattgtagggac 3399
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>ref|XM_476621.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3109

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 2686 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2627

                        
Query: 380  atcgaaggccgg 391
            ||||||||||||
Sbjct: 2626 atcgaaggccgg 2615



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 37   actgtaccaaaagaatttcagtatattgtagggac 71
            |||||||||||| ||| |||||| |||||||||||
Sbjct: 2984 actgtaccaaaataatctcagtacattgtagggac 2950
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                           
Query: 320     ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
               |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 2490851 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2490910

                           
Query: 380     atcgaaggccgg 391
               ||||||||||||
Sbjct: 2490911 atcgaaggccgg 2490922



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 37      actgtaccaaaagaatttcagtatattgtagggac 71
               |||||||||||| ||| |||||| |||||||||||
Sbjct: 2490553 actgtaccaaaataatctcagtacattgtagggac 2490587
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                         
Query: 320   ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
             |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 55831 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 55890

                         
Query: 380   atcgaaggccgg 391
             ||||||||||||
Sbjct: 55891 atcgaaggccgg 55902



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 37    actgtaccaaaagaatttcagtatattgtagggac 71
             |||||||||||| ||| |||||| |||||||||||
Sbjct: 55533 actgtaccaaaataatctcagtacattgtagggac 55567
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>dbj|AK105705.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E02, full
            insert sequence
          Length = 2030

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 1605 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 1546

                        
Query: 380  atcgaaggccgg 391
            ||||||||||||
Sbjct: 1545 atcgaaggccgg 1534



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 37   actgtaccaaaagaatttcagtatattgtagggac 71
            |||||||||||| ||| |||||| |||||||||||
Sbjct: 1903 actgtaccaaaataatctcagtacattgtagggac 1869
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>dbj|AK102834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109J23, full
            insert sequence
          Length = 3540

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 3136 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 3077

                        
Query: 380  atcgaaggccgg 391
            ||||||||||||
Sbjct: 3076 atcgaaggccgg 3065



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 37   actgtaccaaaagaatttcagtatattgtagggac 71
            |||||||||||| ||| |||||| |||||||||||
Sbjct: 3434 actgtaccaaaataatctcagtacattgtagggac 3400
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>dbj|AK099551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033H24, full
            insert sequence
          Length = 3109

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 379
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 2686 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2627

                        
Query: 380  atcgaaggccgg 391
            ||||||||||||
Sbjct: 2626 atcgaaggccgg 2615



 Score = 46.1 bits (23), Expect = 0.087
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 37   actgtaccaaaagaatttcagtatattgtagggac 71
            |||||||||||| ||| |||||| |||||||||||
Sbjct: 2984 actgtaccaaaataatctcagtacattgtagggac 2950
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>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence
          Length = 160392

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 345   gcaaagcactctctaggtgccag 367
             |||||||||||||||||||||||
Sbjct: 80994 gcaaagcactctctaggtgccag 81016
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>gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, complete sequence
          Length = 158510

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 7      ataaaccattttttgcactatttttg 32
              ||||||||||||||||||| ||||||
Sbjct: 146030 ataaaccattttttgcactctttttg 146055
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>gb|AC157770.4| Mus musculus chromosome 1, clone RP24-159C20, complete sequence
          Length = 133072

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 7     ataaaccattttttgcactatttttg 32
             ||||||||||||||||||| ||||||
Sbjct: 47012 ataaaccattttttgcactctttttg 47037
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>ref|XM_630426.1| Dictyostelium discoideum hypothetical protein (DDB0219613), partial
            mRNA
          Length = 8907

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   caaaagaatttcagtatatt 63
            ||||||||||||||||||||
Sbjct: 7405 caaaagaatttcagtatatt 7424
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>gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-121E15, complete
             sequence
          Length = 197761

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   agaaggctgtgcttgagagt 296
             ||||||||||||||||||||
Sbjct: 34668 agaaggctgtgcttgagagt 34687
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 373     ttcgcccatcgaaggccggttcac 396
               ||||||||||||||||||| ||||
Sbjct: 4025281 ttcgcccatcgaaggccggctcac 4025304
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     ggattgctcggcttctttga 260
               ||||||||||||||||||||
Sbjct: 4041078 ggattgctcggcttctttga 4041059
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>gb|AC091839.2| Homo sapiens chromosome 5 clone CTD-2108O9, complete sequence
          Length = 133786

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   aacaacttgcccatctgaat 221
             ||||||||||||||||||||
Sbjct: 56031 aacaacttgcccatctgaat 56012
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>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaagaatttcagtatattgt 65
             ||||||||||||||||||||
Sbjct: 81935 aaagaatttcagtatattgt 81916
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>emb|CT573500.2| Medicago truncatula chromosome 5 clone mte1-57o10, COMPLETE SEQUENCE
          Length = 95579

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    actatttttgctctactgta 42
             ||||||||||||||||||||
Sbjct: 53531 actatttttgctctactgta 53550
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>gb|AY880360.1| Gekko japonicus GekBS129P mRNA, complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   tacaagtaacatgcacctaa 114
            ||||||||||||||||||||
Sbjct: 1111 tacaagtaacatgcacctaa 1092
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>gb|U00058.1| Caenorhabditis elegans cosmid W03A5, complete sequence
          Length = 35769

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     aaaccattttttgcactatttttg 32
             ||||||||||||| ||||||||||
Sbjct: 27304 aaaccattttttgtactatttttg 27327
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ccattttttgcactattttt 31
              ||||||||||||||||||||
Sbjct: 773058 ccattttttgcactattttt 773077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,214,507
Number of Sequences: 3902068
Number of extensions: 3214507
Number of successful extensions: 77805
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77701
Number of HSP's gapped (non-prelim): 104
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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