ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl20c03 |
|---|---|
| Clone Library Name | barley_pub |
>ODBA_HUMAN (P12694) 2-oxoisovalerate dehydrogenase alpha subunit,| mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) (BCKDE1A) Length = 445 Score = 68.2 bits (165), Expect = 9e-12 Identities = 31/82 (37%), Positives = 49/82 (59%) Frame = -1 Query: 436 PVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIPSN 257 P+SR R ++ GWW QE R R+++++A + AER PK LF+DVY ++P+ Sbjct: 360 PISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQ 419 Query: 256 LRQQERSLLDTIKRHPAEYPAD 191 LR+Q+ SL ++ + YP D Sbjct: 420 LRKQQESLARHLQTYGEHYPLD 441
>ODBA_MOUSE (P50136) 2-oxoisovalerate dehydrogenase alpha subunit,| mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) Length = 442 Score = 66.2 bits (160), Expect = 3e-11 Identities = 30/82 (36%), Positives = 50/82 (60%) Frame = -1 Query: 436 PVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIPSN 257 P+SR R+++ GWW QE R R+++++A + AER K + LF+DVY ++P+ Sbjct: 357 PISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQ 416 Query: 256 LRQQERSLLDTIKRHPAEYPAD 191 LR+Q+ SL ++ + YP D Sbjct: 417 LRRQQESLARHLQTYGEHYPLD 438
>ODBA_MACFA (Q8HXY4) 2-oxoisovalerate dehydrogenase alpha subunit,| mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) Length = 445 Score = 66.2 bits (160), Expect = 3e-11 Identities = 30/82 (36%), Positives = 49/82 (59%) Frame = -1 Query: 436 PVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIPSN 257 P+SR R ++ GWW QE R R+++++A + AER PK LF+DVY ++P+ Sbjct: 360 PISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQ 419 Query: 256 LRQQERSLLDTIKRHPAEYPAD 191 LR+Q+ SL ++ + YP + Sbjct: 420 LRKQQESLARHLQTYGEHYPLE 441
>ODBA_RAT (P11960) 2-oxoisovalerate dehydrogenase alpha subunit,| mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) (Fragment) Length = 441 Score = 66.2 bits (160), Expect = 3e-11 Identities = 30/82 (36%), Positives = 50/82 (60%) Frame = -1 Query: 436 PVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIPSN 257 P+SR R+++ GWW QE R R+++++A + AER K + LF+DVY ++P+ Sbjct: 356 PISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQ 415 Query: 256 LRQQERSLLDTIKRHPAEYPAD 191 LR+Q+ SL ++ + YP D Sbjct: 416 LRRQQESLARHLQTYGEHYPLD 437
>ODBA_BOVIN (P11178) 2-oxoisovalerate dehydrogenase alpha subunit,| mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) Length = 455 Score = 66.2 bits (160), Expect = 3e-11 Identities = 30/82 (36%), Positives = 49/82 (59%) Frame = -1 Query: 436 PVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIPSN 257 P+SR R +Q GWW QE R R+++++A + AER K + +F+DVY ++P+ Sbjct: 370 PISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQ 429 Query: 256 LRQQERSLLDTIKRHPAEYPAD 191 LR+Q+ SL ++ + YP D Sbjct: 430 LRKQQESLARHLQTYGEHYPLD 451
>ODPA_BACST (P21873) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 368 Score = 52.8 bits (125), Expect = 4e-07 Identities = 19/66 (28%), Positives = 44/66 (66%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+ + ++E+ +AI+ A+ PK + +L + +++++P Sbjct: 293 KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELP 352 Query: 262 SNLRQQ 245 NL++Q Sbjct: 353 FNLKEQ 358
>ODPA_BACSU (P21881) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) (S complex, 42 kDa subunit) (Vegetative protein 220) (VEG220) Length = 370 Score = 51.2 bits (121), Expect = 1e-06 Identities = 20/66 (30%), Positives = 43/66 (65%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+R +++ G W +E+++ + ++E+ QAI+ A+ PK + +L +Y+++P Sbjct: 295 KDPLVRFRAFLENKGLWSEEEEAKVIEDAKEEIKQAIKKADAEPKQKVTDLMKIMYEKMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 HNLEEQ 360
>ODPA_STAES (Q8CPN3) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 47.0 bits (110), Expect = 2e-05 Identities = 19/66 (28%), Positives = 39/66 (59%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + E+ AI+ A+ K + L +Y+++P Sbjct: 295 KDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAEQ (Q5HQ76) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 47.0 bits (110), Expect = 2e-05 Identities = 19/66 (28%), Positives = 39/66 (59%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + E+ AI+ A+ K + L +Y+++P Sbjct: 295 KDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAAW (P60090) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + ++ AI+ A+ K + L +Y+ +P Sbjct: 295 KDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAAS (Q6GAC1) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + ++ AI+ A+ K + L +Y+ +P Sbjct: 295 KDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAAR (Q6GHZ2) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + ++ AI+ A+ K + L +Y+ +P Sbjct: 295 KDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAAN (Q820A6) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + ++ AI+ A+ K + L +Y+ +P Sbjct: 295 KDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAAM (P60089) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + ++ AI+ A+ K + L +Y+ +P Sbjct: 295 KDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_STAAC (Q5HGZ1) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = -1 Query: 442 RDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIP 263 +DP+ R+RK+++ G W +E+++ + ++ AI+ A+ K + L +Y+ +P Sbjct: 295 KDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMP 354 Query: 262 SNLRQQ 245 NL +Q Sbjct: 355 QNLAEQ 360
>ODPA_ARATH (P52901) Pyruvate dehydrogenase E1 component alpha subunit,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) Length = 389 Score = 34.3 bits (77), Expect = 0.15 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = -1 Query: 451 RTARDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVY 275 R RDP+ R +K V + + + +R+E+ AI A+ P +ELFT+VY Sbjct: 310 RQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVY 368
>ODPA_RHIME (Q9R9N5) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) Length = 348 Score = 32.3 bits (72), Expect = 0.56 Identities = 14/58 (24%), Positives = 29/58 (50%) Frame = -1 Query: 451 RTARDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDV 278 R+ DP+ + + + GW + Q+ VR + + A+ P+ ++EL+TD+ Sbjct: 289 RSEHDPIEQVKARLTDKGWATEDELKQIDKEVRDIVADSADFAQSDPEPDVSELYTDI 346
>ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component alpha subunit,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) Length = 397 Score = 31.6 bits (70), Expect = 0.95 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -1 Query: 451 RTARDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVY 275 R RDP+ R RK + + + VR+E+ +AI A+ P ++LF++VY Sbjct: 318 RQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKDSPMPDPSDLFSNVY 376
>ODPA_SOLTU (P52903) Pyruvate dehydrogenase E1 component alpha subunit,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) Length = 391 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = -1 Query: 451 RTARDPVSRYRKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVY 275 R RDPV R R + + + + R+ + +AI A+ P +ELFT+VY Sbjct: 312 RQERDPVERIRSLILAHNIATEAELKDIEKENRKVVDEAIAKAKESPMPDPSELFTNVY 370
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +2 Query: 302 PVFWHPLGHLNGLQELLPHIVPELRLLSTAPPSIPLNPFSVPGDGIP 442 PV P H L +PH VP+ A P + + PF VP G+P Sbjct: 330 PVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMP 376
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +2 Query: 302 PVFWHPLGHLNGLQELLPHIVPELRLLSTAPPSIPLNPFSVPGDGIP 442 PV P H L +PH VP+ A P + + PF VP G+P Sbjct: 328 PVQTVPQPHPQTLPPAVPHSVPQPTTAIPAFPPVMVPPFRVPLPGMP 374
>UAP1_ARATH (O64765) Probable UDP-N-acetylglucosamine pyrophosphorylase (EC| 2.7.7.23) Length = 502 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -2 Query: 393 GAVLKSLNSGTM*GKSSCKPFRWPRGCQNTGLRSSSQMFMIKS 265 G VL S GT G S P+GC N GL S +F I++ Sbjct: 126 GVVLLSGGQGTRLGSSD------PKGCYNIGLPSGKSLFQIQA 162
>PDR3_YEAST (P33200) Transcription factor PDR3 (Pleiotropic drug resistance| protein 3) Length = 976 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 283 DVYDQIPSNLRQQERSLLDTIKRHPA 206 D + +P NLR Q+RSL T ++H A Sbjct: 908 DASENVPCNLRHQDRSLQQTKRQHSA 933
>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)| (DNA-PK catalytic subunit) (DNA-PKcs) Length = 4134 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/63 (25%), Positives = 26/63 (41%) Frame = -1 Query: 421 RKWVQGNGWWCGTQESQLRNNVRQELLQAIQVAERMPKHGLAELFTDVYDQIPSNLRQQE 242 R W + + WW + + V L + +Q+ + + E FT V+D S L Q Sbjct: 1623 RNWKRLDSWWAKDSSPESKMAVLTLLAKVLQIDSSVSFNTSHEAFTAVFDTYTSLLTDQN 1682 Query: 241 RSL 233 L Sbjct: 1683 LGL 1685
>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) (Protein G3) Length = 1132 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -2 Query: 450 EQQGIPSPGTENGFRGMDGGAVLKSLN 370 EQQ +P PG+ +G G GG L+SL+ Sbjct: 671 EQQTMPPPGSPSGGAGSPGGLGLESLS 697 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,166,823 Number of Sequences: 219361 Number of extensions: 1286375 Number of successful extensions: 3798 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3795 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
