Clone Information

BLAST Search Result

Clone Name	rbastl20c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK068933.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	153	6e-34
2	dbj\|AK064862.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	153	6e-34
3	dbj\|AK060732.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	153	6e-34
4	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
5	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	88	3e-14
6	emb\|AL954158.4\|CNS08CCW Oryza sativa chromosome 12, . Partial se...	88	3e-14
7	gb\|BT016632.1\| Zea mays clone Contig465 mRNA sequence	78	3e-11
8	gb\|AY106153.1\| Zea mays PCO079304 mRNA sequence	70	7e-09
9	gb\|BT018525.1\| Zea mays clone EL01N0432G12.d mRNA sequence	66	1e-07
10	gb\|AC124306.4\| Homo sapiens chromosome 15, clone RP11-275I4, com...	42	1.5
11	gb\|AC096592.4\| Homo sapiens BAC clone RP11-775M18 from 4, comple...	42	1.5
12	gb\|DP000051.1\| Carollia perspicillata target 126 genomic scaffold	42	1.5
13	gb\|AC113058.6\| Mus musculus chromosome 6, clone RP23-253C24, com...	42	1.5
14	gb\|AC144742.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.1
15	ref\|XM_584132.2\| PREDICTED: Bos taurus similar to Sulfonylurea r...	40	6.1
16	gb\|AY485632.1\| Sphaerophorus globosus DNA-dependent RNA polymera...	40	6.1
17	emb\|CR854931.8\| Zebrafish DNA sequence from clone DKEY-30P2 in l...	40	6.1
18	emb\|CR854933.8\| Zebrafish DNA sequence from clone DKEY-48H17 in ...	40	6.1
19	gb\|AC091770.5\| Homo sapiens BAC clone RP11-655M5 from 7, complet...	40	6.1
20	emb\|AL929101.4\| Human DNA sequence from clone RP11-22B10 on chro...	40	6.1
21	emb\|AL662886.6\| Human DNA sequence from clone RP13-339K12 on chr...	40	6.1
22	emb\|AL159996.7\| Human DNA sequence from clone RP11-401F12 on chr...	40	6.1
23	emb\|AL031433.4\|HS171N11 Human DNA sequence from clone RP1-171N11...	40	6.1
24	gb\|AC159646.2\| Mus musculus BAC clone RP23-192K23 from chromosom...	40	6.1
25	emb\|AL161499.2\|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, ...	40	6.1
26	gb\|AC091639.5\| Homo sapiens chromosome 8, clone RP11-61K18, comp...	40	6.1
27	gb\|AC093879.3\| Homo sapiens BAC clone RP11-650J17 from 4, comple...	40	6.1
28	gb\|AC024791.1\| Caenorhabditis elegans cosmid Y47G6A, complete se...	40	6.1
29	gb\|AC016604.6\| Homo sapiens chromosome 5 clone CTD-2150I21, comp...	40	6.1
30	gb\|AC016635.8\| Homo sapiens chromosome 5 clone RP11-313I12, comp...	40	6.1
31	gb\|AC090960.3\| Homo sapiens chromosome 3 clone RP11-83E7 map 3p,...	40	6.1
32	ref\|NM_058988.1\| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) ...	40	6.1
33	emb\|BX548166.7\| Zebrafish DNA sequence from clone CH211-280G5 in...	40	6.1
34	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
35	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
36	gb\|AC025828.3\|AC025828 Homo sapiens, clone RP11-13I24, complete ...	40	6.1
37	gb\|AC124989.7\| Mus musculus chromosome 1, clone RP24-404O8, comp...	40	6.1
38	dbj\|AP005517.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
39	dbj\|AP005410.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
40	dbj\|AK120753.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
41	dbj\|AK070681.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
42	gb\|AC133079.4\| Mus musculus BAC clone RP24-468O18 from 12, compl...	40	6.1
43	gb\|AF076274.1\|T27D20 Arabidopsis thaliana BAC T27D20	40	6.1
44	emb\|AL929129.6\| Mouse DNA sequence from clone RP23-238P9 on chro...	40	6.1
45	gb\|AC115893.10\| Mus musculus chromosome 1, clone RP24-442I13, co...	40	6.1

>dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N22, full
           insert sequence
          Length = 1157

 Score =  153 bits (77), Expect = 6e-34
 Identities = 209/253 (82%)
 Strand = Plus / Minus

                                                                       
Query: 178 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
           |||||| | |||||||||| || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 968 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 909

                                                                       
Query: 238 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
           | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 908 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 849

                                                                       
Query: 298 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 357
           | |||    |||| ||||| || || |||||||||||||||| ||| |||||||||||||
Sbjct: 848 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 789

                                                                       
Query: 358 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 417
           ||||||||||||||| ||| || |    | | |||||||| |||||||||||||||||||
Sbjct: 788 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 729

                        
Query: 418 ttctgtacctgga 430
           |||||||||||||
Sbjct: 728 ttctgtacctgga 716

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>dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full
            insert sequence
          Length = 1725

 Score =  153 bits (77), Expect = 6e-34
 Identities = 209/253 (82%)
 Strand = Plus / Minus

                                                                        
Query: 178  actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
            |||||| | |||||||||| || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 1634 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1575

                                                                        
Query: 238  accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
            | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 1574 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1515

                                                                        
Query: 298  caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 357
            | |||    |||| ||||| || || |||||||||||||||| ||| |||||||||||||
Sbjct: 1514 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1455

                                                                        
Query: 358  cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 417
            ||||||||||||||| ||| || |    | | |||||||| |||||||||||||||||||
Sbjct: 1454 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 1395

                         
Query: 418  ttctgtacctgga 430
            |||||||||||||
Sbjct: 1394 ttctgtacctgga 1382

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>dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A05, full
            insert sequence
          Length = 1705

 Score =  153 bits (77), Expect = 6e-34
 Identities = 209/253 (82%)
 Strand = Plus / Minus

                                                                        
Query: 178  actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
            |||||| | |||||||||| || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 1560 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1501

                                                                        
Query: 238  accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
            | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 1500 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1441

                                                                        
Query: 298  caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 357
            | |||    |||| ||||| || || |||||||||||||||| ||| |||||||||||||
Sbjct: 1440 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1381

                                                                        
Query: 358  cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 417
            ||||||||||||||| ||| || |    | | |||||||| |||||||||||||||||||
Sbjct: 1380 cattgttcctgagttcagattcatcttcatcacaccaccaaccattcccctgaacccatt 1321

                         
Query: 418  ttctgtacctgga 430
            |||||||||||||
Sbjct: 1320 ttctgtacctgga 1308

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                           
Query: 347     ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 406
               |||||||||||||||||||||||||| ||| || |    | | |||||||| ||||||||
Sbjct: 4211674 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211615

                                       
Query: 407     ctgaacccattttctgtacctgga 430
               ||||||||||||||||||||||||
Sbjct: 4211614 ctgaacccattttctgtacctgga 4211591



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 137/171 (80%)
 Strand = Plus / Minus

                                                                           
Query: 178     actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
               |||||| | |||||||||| || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 4211930 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211871

                                                                           
Query: 238     accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
               | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 4211870 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211811

                                                                  
Query: 298     caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 348
               | |||    |||| ||||| || || |||||||||||||||| ||| ||||
Sbjct: 4211810 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211760

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                           
Query: 347     ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 406
               |||||||||||||||||||||||||| ||| || |    | | |||||||| ||||||||
Sbjct: 4211661 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211602

                                       
Query: 407     ctgaacccattttctgtacctgga 430
               ||||||||||||||||||||||||
Sbjct: 4211601 ctgaacccattttctgtacctgga 4211578



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 137/171 (80%)
 Strand = Plus / Minus

                                                                           
Query: 178     actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
               |||||| | |||||||||| || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 4211917 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211858

                                                                           
Query: 238     accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
               | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 4211857 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211798

                                                                  
Query: 298     caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 348
               | |||    |||| ||||| || || |||||||||||||||| ||| ||||
Sbjct: 4211797 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211747

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>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 104999

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 347   ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 406
             |||||||||||||||||||||||||| ||| || |    | | |||||||| ||||||||
Sbjct: 72109 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 72168

                                     
Query: 407   ctgaacccattttctgtacctgga 430
             ||||||||||||||||||||||||
Sbjct: 72169 ctgaacccattttctgtacctgga 72192



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 137/171 (80%)
 Strand = Plus / Plus

                                                                         
Query: 178   actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
             |||||| | |||||||||| || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 71853 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 71912

                                                                         
Query: 238   accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
             | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 71913 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 71972

                                                                
Query: 298   caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 348
             | |||    |||| ||||| || || |||||||||||||||| ||| ||||
Sbjct: 71973 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 72023

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>gb|BT016632.1| Zea mays clone Contig465 mRNA sequence
          Length = 1349

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 218/275 (79%), Gaps = 2/275 (0%)
 Strand = Plus / Minus

                                                                        
Query: 178  actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
            ||||||| || |||||||  || || ||||||||||||||  |||| |||||| ||||| 
Sbjct: 1241 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1182

                                                                        
Query: 238  accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
            |  ||||||| |   | |||||||||||||| | ||| |||||||| ||||| ||||| |
Sbjct: 1181 attgctcttgttcatgcaggttggaagggatcttatcgtaaacatcagtgaaaagctcag 1122

                                                                        
Query: 298  caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 356
             || |  ||| ||||||||| || || || ||||| |||||||| || |||||||  |||
Sbjct: 1121 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1063

                                                                        
Query: 357  acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 416
            ||  || ||||||| | ||| |||| || | |  |||||||  |||| ||||||||||||
Sbjct: 1062 actctgctcctgaggtcagattcttcagcatcagaccaccagtcattaccctgaacccat 1003

                                               
Query: 417  tttctgtacctggagacgggatcccttgctgttcg 451
            |||||||| ||||| |  |||||||| ||||||||
Sbjct: 1002 tttctgtatctggaaattggatccctcgctgttcg 968

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>gb|AY106153.1| Zea mays PCO079304 mRNA sequence
          Length = 1709

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 217/275 (78%), Gaps = 2/275 (0%)
 Strand = Plus / Minus

                                                                        
Query: 178  actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 237
            ||||||| || |||||||  || || ||||||||||||||  |||| |||||| ||||| 
Sbjct: 1587 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1528

                                                                        
Query: 238  accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 297
            |  ||||||| |   | |||||||||||||| |  || |||||||| ||||| ||||| |
Sbjct: 1527 attgctcttgttcatgcaggttggaagggatcttgtcgtaaacatcagtgaaaagctcag 1468

                                                                        
Query: 298  caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 356
             || |  ||| ||||||||| || || || ||||| |||||||| || |||||||  |||
Sbjct: 1467 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1409

                                                                        
Query: 357  acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 416
            ||  || ||||||| | ||| |||| || | |  |||||||  |||| ||||||||||||
Sbjct: 1408 actctgctcctgagctcagattcttcagcatcagaccaccagtcattaccctgaacccat 1349

                                               
Query: 417  tttctgtacctggagacgggatcccttgctgttcg 451
            |||||||| ||||| |  |||||||| ||||||||
Sbjct: 1348 tttctgtatctggaaatcggatccctcgctgttcg 1314

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>gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence
          Length = 1695

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 156/197 (79%)
 Strand = Plus / Minus

                                                                        
Query: 255  aggttggaagggatttgatcataaacatctgtgaagagctccgcaagcccgtgttttggc 314
            |||||||||||||| | ||| |||||||| ||||| ||||| | ||    | ||||||||
Sbjct: 1454 aggttggaagggatcttatcgtaaacatcagtgaaaagctcagtaactgggggttttggc 1395

                                                                        
Query: 315  atcctctcggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttga 374
            || || || || ||||| |||||||| || |||||||  |||||  || |||||||   |
Sbjct: 1394 attctttctgcaacctggatggcttggagaagctcttttctcactctgctcctgagggca 1335

                                                                        
Query: 375  gactcttgagtaccgcaccaccatccattcccctgaacccattttctgtacctggagacg 434
            || |||| || | |  |||||||  |||| |||||||||||||||||||| ||||| |  
Sbjct: 1334 gattcttcagcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatt 1275

                             
Query: 435  ggatcccttgctgttcg 451
            |||||||| ||||||||
Sbjct: 1274 ggatccctcgctgttcg 1258

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>gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, complete sequence
          Length = 160846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    agattttttggatgagcagtt 56
             |||||||||||||||||||||
Sbjct: 16375 agattttttggatgagcagtt 16395

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>gb|AC096592.4| Homo sapiens BAC clone RP11-775M18 from 4, complete sequence
          Length = 94634

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 20    gtattatttctttcaaagatttttt 44
             ||||||||| |||||||||||||||
Sbjct: 62106 gtattatttatttcaaagatttttt 62130

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>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     tattatttctttcaaagattt 41
              |||||||||||||||||||||
Sbjct: 419910 tattatttctttcaaagattt 419930

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>gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, complete sequence
          Length = 248761

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    tatttctttcaaagatttttt 44
             |||||||||||||||||||||
Sbjct: 36559 tatttctttcaaagatttttt 36579

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>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16,
              complete sequence
          Length = 162082

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    gggtacttacagactccaac 157
              ||||||||||||||||||||
Sbjct: 126085 gggtacttacagactccaac 126104

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>ref|XM_584132.2| PREDICTED: Bos taurus similar to Sulfonylurea receptor 1 (LOC538996),
            mRNA
          Length = 2629

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  acagactccaacaacatcgc 165
            ||||||||||||||||||||
Sbjct: 1483 acagactccaacaacatcgc 1502

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>gb|AY485632.1| Sphaerophorus globosus DNA-dependent RNA polymerase II second
           largest subunit gene, partial cds
          Length = 2758

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 342 aggagctcttgcctcacatt 361
           ||||||||||||||||||||
Sbjct: 461 aggagctcttgcctcacatt 480

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>emb|CR854931.8| Zebrafish DNA sequence from clone DKEY-30P2 in linkage group 14,
             complete sequence
          Length = 203332

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aattcaagctataatcaata 101
             ||||||||||||||||||||
Sbjct: 84164 aattcaagctataatcaata 84183

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>emb|CR854933.8| Zebrafish DNA sequence from clone DKEY-48H17 in linkage group 14,
              complete sequence
          Length = 190712

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     aattcaagctataatcaata 101
              ||||||||||||||||||||
Sbjct: 122881 aattcaagctataatcaata 122862

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>gb|AC091770.5| Homo sapiens BAC clone RP11-655M5 from 7, complete sequence
          Length = 93543

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     gctaatctcttgtattatttcttt 32
             |||||| |||||||||||||||||
Sbjct: 89185 gctaatatcttgtattatttcttt 89162

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>emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chromosome X Contains the
             GSPT2 gene for G1 to S phase transition 2, a pseudogene
             similar to part of p30 (nuclear protein p30), a zinc
             finger protein pseudogene, the 5' end of a variant of the
             MAGED1 gene for melanoma antigen, family D, 1 and two CpG
             islands, complete sequence
          Length = 157110

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gctaatctcttgtattattt 28
             ||||||||||||||||||||
Sbjct: 10649 gctaatctcttgtattattt 10668

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>emb|AL662886.6| Human DNA sequence from clone RP13-339K12 on chromosome X Contains a
             pseudogene similar to part of p30 (nuclear protein p30)
             and a CpG island, complete sequence
          Length = 63451

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gctaatctcttgtattattt 28
             ||||||||||||||||||||
Sbjct: 17039 gctaatctcttgtattattt 17058

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>emb|AL159996.7| Human DNA sequence from clone RP11-401F12 on chromosome 9 Contains the
             3' end of a novel gene, complete sequence
          Length = 188357

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ttattcctccttttcaagtt 75
             ||||||||||||||||||||
Sbjct: 66468 ttattcctccttttcaagtt 66449

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>emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11 on chromosome 6q23 Contains
             the 5' end of a novel gene, the gene for UC28 protein
             (UROC28) and a CpG island, complete sequence
          Length = 129227

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   ccacctgaatggcttgcagg 344
             ||||||||||||||||||||
Sbjct: 80878 ccacctgaatggcttgcagg 80859

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>gb|AC159646.2| Mus musculus BAC clone RP23-192K23 from chromosome 12, complete
             sequence
          Length = 194901

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    gtttattcctccttttcaagttac 77
             ||||||| ||||||||||||||||
Sbjct: 74226 gtttatttctccttttcaagttac 74203

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>emb|AL161499.2|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 11
          Length = 198022

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     tattcctccttttcaagttacata 80
              ||||||||||||| ||||||||||
Sbjct: 144960 tattcctcctttttaagttacata 144983

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>gb|AC091639.5| Homo sapiens chromosome 8, clone RP11-61K18, complete sequence
          Length = 147480

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    agcagtttattcctcctttt 69
             ||||||||||||||||||||
Sbjct: 87767 agcagtttattcctcctttt 87748

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>gb|AC093879.3| Homo sapiens BAC clone RP11-650J17 from 4, complete sequence
          Length = 216870

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    gcttgcaggagctcttgcct 355
              ||||||||||||||||||||
Sbjct: 143206 gcttgcaggagctcttgcct 143187

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>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence
          Length = 194322

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     tattatttctttcaaagatttttt 44
              |||||||| |||||||||||||||
Sbjct: 130328 tattatttgtttcaaagatttttt 130305

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>gb|AC016604.6| Homo sapiens chromosome 5 clone CTD-2150I21, complete sequence
          Length = 94147

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    tattatttctttcaaagatttttt 44
             |||||||||||||||| |||||||
Sbjct: 73525 tattatttctttcaaacatttttt 73502

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>gb|AC016635.8| Homo sapiens chromosome 5 clone RP11-313I12, complete sequence
          Length = 163536

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  tattatttctttcaaagatttttt 44
           |||||||||||||||| |||||||
Sbjct: 904 tattatttctttcaaacatttttt 927

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>gb|AC090960.3| Homo sapiens chromosome 3 clone RP11-83E7 map 3p, complete sequence
          Length = 176744

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   ttattcatgggtacttacag 149
             ||||||||||||||||||||
Sbjct: 48384 ttattcatgggtacttacag 48365

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>ref|NM_058988.1| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) mRNA, complete cds
          Length = 915

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tacagactccaacaacatcg 164
           ||||||||||||||||||||
Sbjct: 633 tacagactccaacaacatcg 652

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>emb|BX548166.7| Zebrafish DNA sequence from clone CH211-280G5 in linkage group 10,
             complete sequence
          Length = 166449

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aattcaagctataatcaata 101
             ||||||||||||||||||||
Sbjct: 45541 aattcaagctataatcaata 45560

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 10      ctaatctcttgtattatttctttcaaag 37
               ||||||||||| ||||||| ||||||||
Sbjct: 7867531 ctaatctcttggattatttttttcaaag 7867504

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 138      gggtacttacagactccaac 157
                ||||||||||||||||||||
Sbjct: 16334732 gggtacttacagactccaac 16334751

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>gb|AC025828.3|AC025828 Homo sapiens, clone RP11-13I24, complete sequence
          Length = 152843

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     agcagtttattcctcctttt 69
              ||||||||||||||||||||
Sbjct: 108886 agcagtttattcctcctttt 108905

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>gb|AC124989.7| Mus musculus chromosome 1, clone RP24-404O8, complete sequence
          Length = 184453

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     tttcaaagattttttggatg 49
              ||||||||||||||||||||
Sbjct: 163858 tttcaaagattttttggatg 163839

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>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0090H20
          Length = 132628

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    ctaatctcttgtattatttctttcaaag 37
             ||||||||||| ||||||| ||||||||
Sbjct: 98818 ctaatctcttggattatttttttcaaag 98791

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>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0038P10
          Length = 148527

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    ctaatctcttgtattatttctttcaaag 37
             ||||||||||| ||||||| ||||||||
Sbjct: 57422 ctaatctcttggattatttttttcaaag 57395

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>dbj|AK120753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K02, full
            insert sequence
          Length = 4617

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  gggtacttacagactccaac 157
            ||||||||||||||||||||
Sbjct: 2472 gggtacttacagactccaac 2453

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>dbj|AK070681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063E02, full
            insert sequence
          Length = 3424

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  gggtacttacagactccaac 157
            ||||||||||||||||||||
Sbjct: 2277 gggtacttacagactccaac 2258

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>gb|AC133079.4| Mus musculus BAC clone RP24-468O18 from 12, complete sequence
          Length = 176177

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    gtttattcctccttttcaagttac 77
             ||||||| ||||||||||||||||
Sbjct: 51408 gtttatttctccttttcaagttac 51431

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>gb|AF076274.1|T27D20 Arabidopsis thaliana BAC T27D20
          Length = 80446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    tattcctccttttcaagttacata 80
             ||||||||||||| ||||||||||
Sbjct: 52721 tattcctcctttttaagttacata 52698

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>emb|AL929129.6| Mouse DNA sequence from clone RP23-238P9 on chromosome 2, complete
             sequence
          Length = 139558

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    taatctcttgtattatttct 30
             ||||||||||||||||||||
Sbjct: 40004 taatctcttgtattatttct 39985

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>gb|AC115893.10| Mus musculus chromosome 1, clone RP24-442I13, complete sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tttcaaagattttttggatg 49
             ||||||||||||||||||||
Sbjct: 61046 tttcaaagattttttggatg 61027


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,443,360
Number of Sequences: 3902068
Number of extensions: 4443360
Number of successful extensions: 88272
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88089
Number of HSP's gapped (non-prelim): 175
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result