ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl20c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1URE23_PSEU2 (Q4ZUD1) Urease gamma/beta subunit (EC 3.5.1.5) (Ure... 30 1.8
2URE23_PSESM (Q883F3) Urease gamma/beta subunit (EC 3.5.1.5) (Ure... 30 1.8
3SIMA_DROME (Q24167) Protein similar 29 2.4
4GRPE_STRCO (Q05562) Protein grpE (HSP-70 cofactor) 28 5.4
5ALG10_NEUCR (Q7SA35) Alpha-1,2 glucosyltransferase alg-10 (EC 2.... 27 9.2
6URE3_PSEPK (Q88J06) Urease gamma subunit (EC 3.5.1.5) (Urea amid... 27 9.2
7ESAM_MACFA (Q95KI3) Endothelial cell-selective adhesion molecule... 27 9.2
8ESAM_HUMAN (Q96AP7) Endothelial cell-selective adhesion molecule... 27 9.2

>URE23_PSEU2 (Q4ZUD1) Urease gamma/beta subunit (EC 3.5.1.5) (Urea|
           amidohydrolase gamma/beta subunit)
          Length = 231

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 332 SPLLGETSLQGARDGRLSAELVGVG 258
           S L+ +  L+GAR+GR  AEL+G G
Sbjct: 36  SALIADEILEGAREGRSVAELIGFG 60



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>URE23_PSESM (Q883F3) Urease gamma/beta subunit (EC 3.5.1.5) (Urea|
           amidohydrolase gamma/beta subunit)
          Length = 231

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 332 SPLLGETSLQGARDGRLSAELVGVG 258
           S L+ +  L+GAR+GR  AEL+G G
Sbjct: 36  SALIADEILEGAREGRSVAELIGFG 60



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>SIMA_DROME (Q24167) Protein similar|
          Length = 1507

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 20  KHKMRFAIVHTPKATHDSCQNDFSSNPSSSMV 115
           K K   A+V    A+  SC + FSS+P SS V
Sbjct: 14  KQKQSQAVVTNTSASSSSCSSSFSSSPPSSSV 45



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>GRPE_STRCO (Q05562) Protein grpE (HSP-70 cofactor)|
          Length = 225

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 225 LPLVSKLGTERTDTDQLGGQTTISSSLETSLAK 323
           LP++  +G  R   + +GG  +++ SLET++AK
Sbjct: 97  LPVLDDVGRAREHGELVGGFKSVAESLETTVAK 129



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>ALG10_NEUCR (Q7SA35) Alpha-1,2 glucosyltransferase alg-10 (EC 2.4.1.-)|
           (Alpha-2-glucosyltransferase ALG10)
           (Dolichyl-phosphoglucose-dependent glucosyltransferase
           ALG10) (Asparagine-linked glycosylation protein 10)
          Length = 770

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 259 PTPTNSADRRPSLAPWRLVSPSSGDQSNKI*KEQKRS 369
           PTP+++  + P  + WR   PS   + +   K  +RS
Sbjct: 392 PTPSHTTTKDPGRSSWRFTKPSITSKKSSTTKPPQRS 428



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>URE3_PSEPK (Q88J06) Urease gamma subunit (EC 3.5.1.5) (Urea amidohydrolase|
           gamma subunit)
          Length = 100

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 326 LLGETSLQGARDGRLSAELVGVG 258
           L+    L+GARDGR  AEL+ +G
Sbjct: 38  LISAAVLEGARDGRTVAELMSLG 60



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>ESAM_MACFA (Q95KI3) Endothelial cell-selective adhesion molecule precursor|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 97  IRGKIILA*VVSSLGGVYNCKPH 29
           IRG + L  + SS+ GVY CK H
Sbjct: 205 IRGSLSLTNLSSSMAGVYVCKAH 227



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>ESAM_HUMAN (Q96AP7) Endothelial cell-selective adhesion molecule precursor|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 97  IRGKIILA*VVSSLGGVYNCKPH 29
           IRG + L  + SS+ GVY CK H
Sbjct: 205 IRGSLSLTNLSSSMAGVYVCKAH 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,522,302
Number of Sequences: 219361
Number of extensions: 711654
Number of successful extensions: 1923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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